Homologs of SO0208 from Shewanella oneidensis MR-1

RNA-binding protein (NCBI ptt file)
SEED: RNA-binding protein

47 hits from BLASTp (E < 0.01)

Orth	Species	Gene	Name	Description	Fitness	%Id	Cov
	Shewanella oneidensis MR-1	SO0208		RNA-binding protein (NCBI ptt file)	strong	100	100
o	Shewanella sp. ANA-3	Shewana3_0181		RNP-1-like RNA-binding protein (RefSeq)	strong	95	100
o	Shewanella amazonensis SB2B	Sama_0195		RNA-binding protein (RefSeq)	sig.	68	95
o	Shewanella loihica PV-4	Shew_0140		RNP-1-like RNA-binding protein (RefSeq)	sig.	71	94
o	Vibrio cholerae E7946 ATCC 55056	CSW01_00805		RNA-binding protein	insig.	46	95
o	Alteromonas macleodii MIT1002	MIT1002_03368		splicing factor, CC1-like family	insig.	39	92
	Desulfovibrio vulgaris Miyazaki F	DvMF_0050		RNP-1 like RNA-binding protein (RefSeq)	no data	50	52
	Desulfovibrio vulgaris Miyazaki F	DvMF_0195		RNP-1 like RNA-binding protein (RefSeq)	strong	50	52
	Desulfovibrio vulgaris Hildenborough JW710	DVU2430		RNA-binding protein (TIGR)	insig.	54	48
	Parabacteroides merdae CL09T00C40	HMPREF1078_RS17060		RNA-binding protein	insig.	45	51
	Desulfovibrio vulgaris Hildenborough JW710	DVU2215		RNA-binding protein (TIGR)	no data	49	51
	Desulfovibrio vulgaris Hildenborough JW710	DVU1257		RNA-binding protein (TIGR)	cofit	47	55
	Phocaeicola dorei CL03T12C01	ABI39_RS02340		RNA-binding protein	no data	47	52
	Phocaeicola vulgatus CL09T03C04	HMPREF1058_RS03095		RNA-binding protein	insig.	47	52
	Desulfovibrio vulgaris Miyazaki F	DvMF_2964		RNP-1 like RNA-binding protein (RefSeq)	sig.	50	51
	Variovorax sp. OAS795	ABID97_RS02610		RNA-binding protein	strong	48	51
	Variovorax sp. SCN45	GFF3267		RNA-binding protein	insig.	48	51
	Phocaeicola dorei CL03T12C01	ABI39_RS16930		RNA-binding protein	insig.	48	49
	Hydrogenophaga sp. GW460-11-11-14-LB1	GFF2446		RNA-binding protein	cofit	46	51
	Acidovorax sp. GW101-3H11	Ac3H11_4274		RNA-binding protein	strong	47	51
	Variovorax sp. SCN45	GFF5019		RNA-binding protein	insig.	46	51
	Phocaeicola vulgatus CL09T03C04	HMPREF1058_RS04275		RNA-binding protein	insig.	47	49
	Parabacteroides merdae CL09T00C40	HMPREF1078_RS02075		RNA-binding protein	insig.	47	49
	Mucilaginibacter yixingensis YX-36 DSM 26809	ABZR88_RS19520		RNA-binding protein	no data	44	51
	Variovorax sp. OAS795	ABID97_RS04115		RNA-binding protein	strong	45	51
	Acidovorax sp. GW101-3H11	Ac3H11_4275		RNA-binding protein	no data	46	53
	Bacteroides ovatus ATCC 8483	BACOVA_02523		hypothetical protein	insig.	45	49
	Acidovorax sp. GW101-3H11	Ac3H11_870		RNA-binding protein	insig.	45	56
	Bacteroides ovatus ATCC 8483	BACOVA_00333		hypothetical protein	strong	47	50
	Bacteroides thetaiotaomicron VPI-5482	BT3840		putative RNA-binding protein rbpA (NCBI ptt file)	strong	47	50
	Phocaeicola dorei CL03T12C01	ABI39_RS04260		RNA-binding protein	sig.	45	47
	Synechococcus elongatus PCC 7942	Synpcc7942_1999	rbp2	RNA-binding region RNP-1	strong	41	57
	Phocaeicola vulgatus CL09T03C04	HMPREF1058_RS12475		RNA-binding protein	no data	45	47
	Bacteroides stercoris CC31F	HMPREF1181_RS07465		RNA-binding protein	strong	44	50
	Parabacteroides merdae CL09T00C40	HMPREF1078_RS00575		RNA-binding protein	insig.	43	49
	Phocaeicola dorei CL03T12C01	ABI39_RS02830		RNA-binding protein	insig.	45	49
	Phocaeicola vulgatus CL09T03C04	HMPREF1058_RS08600		RNA-binding protein	insig.	45	49
	Bacteroides thetaiotaomicron VPI-5482	BT0784		putative RNA-binding protein (NCBI ptt file)	no data	43	49
	Bacteroides thetaiotaomicron VPI-5482	BT1887		putative RNA-binding protein rbpA (NCBI ptt file)	no data	37	50
	Synechococcus elongatus PCC 7942	Synpcc7942_0679	rbp1	RNA-binding region RNP-1	strong	44	52
	Bacteroides ovatus ATCC 8483	BACOVA_01523		hypothetical protein	insig.	37	50
	Bacteroides stercoris CC31F	HMPREF1181_RS03710		RNA-binding protein	insig.	34	55
	Kangiella aquimarina DSM 16071	B158DRAFT_1130		RNA-binding proteins (RRM domain)	insig.	42	52
	Alteromonas macleodii MIT1002	MIT1002_03076		polyadenylate binding protein, human types 1, 2, 3, 4 family	insig.	46	40
	Synechococcus elongatus PCC 7942	Synpcc7942_0790	rbp3	RNA-binding region RNP-1	strong	34	56
	Acinetobacter radioresistens SK82	MPMX26_00370		hypothetical protein	insig.	39	51
	Pedobacter sp. GW460-11-11-14-LB5	CA265_RS06140		RNA-binding protein	sig.	32	47