Homologs of ycdS from Escherichia coli BW25113

ycdS: predicted outer membrane protein (NCBI)
SEED: Biofilm PGA outer membrane secretin PgaA
KEGG: biofilm PGA synthesis protein PgaA

42 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
o Escherichia coli BL21 ECD_01026 biofilm adhesin polysaccharide PGA secretin; OM porin; poly-beta-1,6-N-acetyl-D-glucosamine export protein cofit 100 100
o Escherichia coli ECOR27 NOLOHH_21445 pgaA poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA insig. 100 100
o Escherichia coli ECRC100 OKFHMN_04540 pgaA poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA insig. 100 100
o Escherichia coli ECRC102 NIAGMN_23795 pgaA poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA insig. 100 100
o Escherichia coli ECRC62 BNILDI_19605 pgaA poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA insig. 100 100
o Escherichia coli ECRC98 JDDGAC_08150 pgaA poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA insig. 100 100
o Escherichia coli ECRC99 KEDOAH_23205 pgaA poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA no data 100 100
  Escherichia coli BW25113 b1024 ycdS predicted outer membrane protein (NCBI) insig. 100 100
o Escherichia coli ECOR38 HEPCGN_23590 pgaA poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA insig. 98 100
o Escherichia fergusonii Becca EFB2_03057 Poly-beta-1,6-N-acetyl-D-glucosamine export protein insig. 98 100
o Escherichia coli Nissle 1917 ECOLIN_RS05340 poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA insig. 98 100
  Escherichia coli ECRC101 MCAODC_23920 pgaA poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA insig. 100 72
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02640 Poly-beta-1,6-N-acetyl-D-glucosamine export protein insig. 100 56
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02643 Poly-beta-1,6-N-acetyl-D-glucosamine export protein insig. 100 43
o Klebsiella pneumoniae MKP103 KDGMDA_10765 poly-beta-1 6 N-acetyl-D-glucosamine export porin PgaA insig. 43 97
o Enterobacter asburiae PDN3 EX28DRAFT_3018 poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA insig. 42 97
o Enterobacter sp. TBS_079 MPMX20_03837 Poly-beta-1,6-N-acetyl-D-glucosamine export protein insig. 42 96
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4031 Biofilm PGA outer membrane secretin PgaA cofit 39 96
o Pseudomonas fluorescens FW300-N2C3 AO356_10800 poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA strong 39 96
o Pseudomonas lactucae CFBP13502 GEMAOFIL_00369 Poly-beta-1,6-N-acetyl-D-glucosamine export protein insig. 39 98
o Pseudomonas simiae WCS417 PS417_00740 membrane protein sig. 38 98
o Pseudomonas sp. DMC3 GFF4263 Poly-beta-1,6-N-acetyl-D-glucosamine export protein cofit 40 96
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1745 Biofilm PGA outer membrane secretin PgaA insig. 40 96
o Pseudomonas fluorescens SBW25 PFLU_RS00735 poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA insig. 39 96
o Pseudomonas fluorescens SBW25-INTG PFLU_RS00735 poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA insig. 39 96
o Pseudomonas fluorescens FW300-N2E3 AO353_11375 poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA insig. 39 96
o Pseudomonas sp. RS175 PFR28_04738 Poly-beta-1,6-N-acetyl-D-glucosamine export protein cofit 38 96
o Castellaniella sp019104865 MT123 ABCV34_RS10400 poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA cofit 37 97
o Pseudomonas segetis P6 MPMX49_00750 Poly-beta-1,6-N-acetyl-D-glucosamine export protein insig. 37 98
  Escherichia coli ECRC101 MCAODC_23925 pgaA poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA insig. 100 21
  Lysobacter sp. OAE881 ABIE51_RS11915 poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA insig. 26 79
o Acinetobacter baumannii LAC-4 RR41_RS06815 poly-beta-1,6 N-acetyl-D-glucosamine exporter porin PgaA insig. 24 94
o Kangiella aquimarina DSM 16071 B158DRAFT_1768 poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA insig. 23 90
  Enterobacter sp. TBS_079 MPMX20_02483 Poly-beta-1,6-N-acetyl-D-glucosamine export protein insig. 64 10
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS18040 poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA insig. 23 64
  Variovorax sp. SCN45 GFF6898 hypothetical protein cofit 24 65
  Ralstonia solanacearum GMI1000 RS_RS18535 poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA insig. 23 70
  Ralstonia sp. UNC404CL21Col ABZR87_RS22665 poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA insig. 21 69
  Ralstonia solanacearum PSI07 RPSI07_RS01195 poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA insig. 24 70
  Cupriavidus basilensis FW507-4G11 RR42_RS09860 hemin-binding outer membrane protein associated with biofilm formation (hmsH) insig. 25 60
  Paraburkholderia sabiae LMG 24235 QEN71_RS21385 poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA insig. 24 60
  Paraburkholderia sabiae LMG 24235 QEN71_RS21385 poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA insig. 31 11