Conservation of cofitness between Xcc-8004.2282.1 and Xcc-8004.3512.1 in Xanthomonas campestris pv. campestris strain 8004

33 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.2282.1 tRNA:Cm32/Um32 methyltransferase 1.0 Xcc-8004.3512.1 Transcription repressor of tripartite multidrug resistance system 0.36 8
Rhodanobacter denitrificans MT42 0.46 LRK55_RS12670 RNA methyltransferase 0.38 LRK55_RS15395 MarR family transcriptional regulator low > 63
Rhodanobacter sp. FW510-T8 0.45 OKGIIK_02340 trmJ RNA methyltransferase 0.57 OKGIIK_13235 MarR family transcriptional regulator low > 52
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS12970 RNA methyltransferase 0.38 LRK54_RS15645 MarR family transcriptional regulator low > 59
Dyella japonica UNC79MFTsu3.2 0.44 ABZR86_RS19895 RNA methyltransferase 0.57 ABZR86_RS13425 MarR family transcriptional regulator low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.39 GFF2437 tRNA:Cm32/Um32 methyltransferase 0.26 GFF1591 Transcription repressor of tripartite multidrug resistance system low > 78
Enterobacter sp. TBS_079 0.39 MPMX20_03413 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ 0.24 MPMX20_03562 Transcriptional repressor MprA low > 85
Enterobacter asburiae PDN3 0.39 EX28DRAFT_0107 RNA methyltransferase, TrmH family, group 1 0.24 EX28DRAFT_2767 Transcriptional regulators — —
Vibrio cholerae E7946 ATCC 55056 0.39 CSW01_03875 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.18 CSW01_18900 MarR family transcriptional regulator low > 62
Rahnella sp. WP5 0.38 EX31_RS20555 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.25 EX31_RS13645 transcriptional repressor MprA low > 89
Klebsiella michiganensis M5al 0.38 BWI76_RS21170 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.25 BWI76_RS22090 transcriptional regulator low > 92
Shewanella loihica PV-4 0.38 Shew_2320 RNA methyltransferase (RefSeq) 0.21 Shew_3336 MarR family transcriptional regulator (RefSeq) low > 60
Escherichia coli ECOR38 0.38 HEPCGN_20750 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.25 HEPCGN_19985 emrR multidrug efflux transporter EmrAB transcriptional repressor EmrR low > 87
Escherichia coli ECRC101 0.38 MCAODC_12140 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.25 MCAODC_11310 emrR multidrug efflux transporter EmrAB transcriptional repressor EmrR low > 87
Escherichia coli ECRC98 0.38 JDDGAC_25285 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.25 JDDGAC_24450 emrR multidrug efflux transporter EmrAB transcriptional repressor EmrR low > 86
Escherichia coli ECRC100 0.38 OKFHMN_21610 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.25 OKFHMN_20785 emrR multidrug efflux transporter EmrAB transcriptional repressor EmrR low > 80
Escherichia coli ECRC62 0.38 BNILDI_12080 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.25 BNILDI_11185 emrR multidrug efflux transporter EmrAB transcriptional repressor EmrR low > 75
Escherichia coli ECRC99 0.38 KEDOAH_06610 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.25 KEDOAH_07350 emrR multidrug efflux transporter EmrAB transcriptional repressor EmrR — —
Escherichia coli ECRC102 0.38 NIAGMN_19380 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.25 NIAGMN_18555 emrR multidrug efflux transporter EmrAB transcriptional repressor EmrR — —
Escherichia coli Nissle 1917 0.37 ECOLIN_RS14375 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.25 ECOLIN_RS14960 multidrug efflux transporter EmrAB transcriptional repressor EmrR — —
Escherichia coli ECOR27 0.37 NOLOHH_13280 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.25 NOLOHH_12625 emrR multidrug efflux transporter EmrAB transcriptional repressor EmrR low > 75
Escherichia coli BW25113 0.37 b2532 yfhQ predicted methyltransferase (NCBI) 0.25 b2684 mprA DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI) low > 76
Escherichia coli BL21 0.37 ECD_02424 tRNA mC32,mU32 2'-O-methyltransferase, SAM-dependent 0.25 ECD_02539 transcriptional repressor of microcin B17 synthesis and multidrug efflux low > 61
Escherichia fergusonii Becca 0.37 EFB2_01358 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ 0.25 EFB2_01244 Transcriptional repressor MprA low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.37 OHPLBJKB_01177 'tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ' transl_table=11 0.25 OHPLBJKB_01049 Transcriptional repressor MprA low > 73
Serratia liquefaciens MT49 0.37 IAI46_19365 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.27 IAI46_19990 transcriptional repressor MprA low > 86
Shewanella oneidensis MR-1 0.37 SO2261 RNA methyltransferase, TrmH family, group 1 (NCBI ptt file) 0.18 SO2640 transcriptional regulator, MarR family (NCBI ptt file) low > 76
Dickeya dianthicola ME23 0.36 DZA65_RS16730 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.25 DZA65_RS17900 transcriptional repressor MprA low > 75
Pectobacterium carotovorum WPP14 0.36 HER17_RS06005 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.26 HER17_RS04470 transcriptional repressor MprA low > 75
Dickeya dadantii 3937 0.36 DDA3937_RS15555 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.25 DDA3937_RS16755 transcriptional repressor MprA low > 74
Dickeya dianthicola 67-19 0.35 HGI48_RS15655 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.24 HGI48_RS16825 transcriptional repressor MprA low > 71
Pantoea sp. MT58 0.35 IAI47_04995 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.25 IAI47_04505 transcriptional repressor MprA low > 76
Erwinia tracheiphila SCR3 0.34 LU632_RS17880 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.25 LU632_RS16835 mprA transcriptional repressor MprA low > 74
Castellaniella sp019104865 MT123 0.29 ABCV34_RS00355 RNA methyltransferase 0.22 ABCV34_RS05935 MarR family transcriptional regulator low > 48

Not shown: 53 genomes with orthologs for Xcc-8004.2282.1 only; 0 genomes with orthologs for Xcc-8004.3512.1 only