Conservation of cofitness between Psyr_1497 and Psyr_3403 in Pseudomonas syringae pv. syringae B728a

46 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_1497 Heavy metal response regulator 1.0 Psyr_3403 conserved hypothetical protein 0.42 10
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_1497 Heavy metal response regulator 1.00 Psyr_3403 conserved hypothetical protein low > 86
Pseudomonas sp. DMC3 0.85 GFF3411 Transcriptional activator protein CopR 0.85 GFF1261 Ribosomal RNA large subunit methyltransferase M low > 89
Pseudomonas sp. BP01 0.84 JOY50_RS08590 heavy metal response regulator transcription factor 0.82 JOY50_RS22010 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 84
Pseudomonas putida KT2440 0.83 PP_5383 transcriptional activator protein 0.83 PP_2113 Ribosomal RNA large subunit methyltransferase M low > 96
Pseudomonas segetis P6 0.81 MPMX49_00050 Transcriptional activator protein CopR 0.82 MPMX49_02323 Ribosomal RNA large subunit methyltransferase M low > 75
Pseudomonas stutzeri RCH2 0.77 Psest_0581 heavy metal response regulator 0.81 Psest_2520 Predicted SAM-dependent methyltransferase low > 67
Pseudomonas fluorescens SBW25 0.72 PFLU_RS07760 heavy metal response regulator transcription factor 0.89 PFLU_RS07600 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 109
Pseudomonas fluorescens SBW25-INTG 0.72 PFLU_RS07760 heavy metal response regulator transcription factor 0.89 PFLU_RS07600 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 109
Pseudomonas fluorescens FW300-N2E3 0.71 AO353_00355 transcriptional regulator 0.85 AO353_00560 23S rRNA methyltransferase low > 101
Pseudomonas fluorescens GW456-L13 0.71 PfGW456L13_4017 Copper-sensing two-component system response regulator CusR 0.84 PfGW456L13_4051 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM low > 87
Pseudomonas simiae WCS417 0.71 PS417_07685 transcriptional regulator 0.88 PS417_07520 23S rRNA methyltransferase — —
Pseudomonas fluorescens FW300-N1B4 0.70 Pf1N1B4_67 Copper-sensing two-component system response regulator CusR 0.88 Pf1N1B4_3890 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM — —
Pseudomonas aeruginosa MRSN321 0.70 DY961_RS03005 heavy metal response regulator transcription factor 0.76 DY961_RS19450 rlmM;go_function=methyltransferase 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 100
Pseudomonas aeruginosa PUPa3 0.70 DQ20_RS32585 heavy metal response regulator transcription factor 0.76 DQ20_RS53575 rlmM;go_function=methyltransferase 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 101
Pseudomonas lactucae CFBP13502 0.70 GEMAOFIL_01669 Transcriptional activator protein CopR 0.88 GEMAOFIL_01636 Ribosomal RNA large subunit methyltransferase M low > 96
Pseudomonas orientalis W4I3 0.70 QF045_RS10330 heavy metal response regulator transcription factor 0.88 QF045_RS10165 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 93
Pseudomonas aeruginosa PA14 0.70 IKLFDK_14215 DNA-binding response regulator 0.76 IKLFDK_07475 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 98
Pseudomonas sp. S08-1 0.69 OH686_22680 Copper-sensing two-component system response regulator CusR 0.82 OH686_02095 23S rRNA (cytidine(2498)-2'-O)-methyltransferase low > 80
Pseudomonas sp. SVBP6 0.67 COO64_RS09510 heavy metal response regulator transcription factor 0.86 COO64_RS05200 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 93
Kangiella aquimarina DSM 16071 0.66 B158DRAFT_1663 heavy metal response regulator 0.35 B158DRAFT_2158 Predicted SAM-dependent methyltransferase low > 40
Pseudomonas sp. RS175 0.66 PFR28_01134 Transcriptional activator protein CopR 0.88 PFR28_01100 Ribosomal RNA large subunit methyltransferase M low > 88
Pseudomonas fluorescens FW300-N2E2 0.66 Pf6N2E2_2266 Copper-sensing two-component system response regulator CusR 0.89 Pf6N2E2_2300 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM low > 103
Alteromonas macleodii MIT1002 0.65 MIT1002_00247 Transcriptional regulatory protein CusR 0.33 MIT1002_01523 Ribosomal RNA large subunit methyltransferase M low > 70
Pseudomonas fluorescens FW300-N2C3 0.65 AO356_02215 transcriptional regulator 0.90 AO356_02380 23S rRNA methyltransferase low > 104
Enterobacter asburiae PDN3 0.64 EX28DRAFT_1165 heavy metal response regulator 0.48 EX28DRAFT_2881 Predicted SAM-dependent methyltransferase low > 76
Enterobacter sp. TBS_079 0.64 MPMX20_02319 Transcriptional regulatory protein CusR 0.48 MPMX20_03669 Ribosomal RNA large subunit methyltransferase M low > 85
Klebsiella pneumoniae MKP103 0.64 KDGMDA_11860 copper response regulator transcription factor CusR 0.48 KDGMDA_03505 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 95
Shewanella sp. ANA-3 0.63 Shewana3_4296 DNA-binding transcriptional activator CusR (RefSeq) 0.46 Shewana3_2891 putative RNA 2'-O-ribose methyltransferase (RefSeq) low > 73
Escherichia coli ECRC98 0.63 JDDGAC_11350 cusR copper response regulator transcription factor CusR 0.47 JDDGAC_23795 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 87
Escherichia coli ECOR38 0.63 HEPCGN_00585 cusR copper response regulator transcription factor CusR 0.47 HEPCGN_19385 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 88
Escherichia coli BW25113 0.63 b0571 cusR DNA-binding response regulator in two-component regulatory system with CusS (NCBI) 0.47 b2806 ygdE predicted methyltransferase (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.63 OHPLBJKB_03138 Transcriptional regulatory protein CusR 0.47 OHPLBJKB_00925 Ribosomal RNA large subunit methyltransferase M 0.47 24
Escherichia coli ECRC101 0.63 MCAODC_26920 cusR copper response regulator transcription factor CusR 0.47 MCAODC_10655 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 87
Escherichia coli Nissle 1917 0.63 ECOLIN_RS03125 copper response regulator transcription factor CusR 0.47 ECOLIN_RS15640 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM — —
Escherichia coli ECRC100 0.63 OKFHMN_07705 cusR copper response regulator transcription factor CusR 0.47 OKFHMN_20130 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 79
Escherichia coli ECRC102 0.63 NIAGMN_05760 cusR copper response regulator transcription factor CusR 0.47 NIAGMN_17900 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 80
Escherichia coli ECRC62 0.63 BNILDI_22095 cusR copper response regulator transcription factor CusR 0.47 BNILDI_10515 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 75
Escherichia fergusonii Becca 0.63 EFB2_03523 Transcriptional regulatory protein CusR 0.47 EFB2_01111 Ribosomal RNA large subunit methyltransferase M 0.35 43
Escherichia coli ECRC99 0.63 KEDOAH_20265 cusR copper response regulator transcription factor CusR 0.47 KEDOAH_08000 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM — —
Dickeya dianthicola ME23 0.63 DZA65_RS03595 copper/silver response regulator transcription factor SilR 0.45 DZA65_RS05400 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 75
Escherichia coli BL21 0.62 ECD_00532 response regulator in two-component regulatory system with CusS 0.47 ECD_02657 23S rRNA C2498 2'-O-ribose methyltransferase, SAM-dependent low > 61
Escherichia coli ECOR27 0.62 NOLOHH_24085 cusR copper response regulator transcription factor CusR 0.47 NOLOHH_12010 rlmM 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 76
Dickeya dianthicola 67-19 0.62 HGI48_RS03485 heavy metal response regulator transcription factor 0.45 HGI48_RS05060 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 71
Shewanella loihica PV-4 0.61 Shew_3258 two component heavy metal response transcriptional regulator (RefSeq) 0.45 Shew_2761 putative RNA 2'-O-ribose methyltransferase (RefSeq) low > 60
Dickeya dadantii 3937 0.60 DDA3937_RS03385 heavy metal response regulator transcription factor 0.45 DDA3937_RS05060 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF3273 Putative two-component system response regulator YedW 0.47 GFF4863 'LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM' transl_table=11 low > 78

Not shown: 27 genomes with orthologs for Psyr_1497 only; 14 genomes with orthologs for Psyr_3403 only