Conservation of cofitness between Pf6N2E2_4435 and Pf6N2E2_5396 in Pseudomonas fluorescens FW300-N2E2

38 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N2E2 1.0 Pf6N2E2_4435 Regulator of sigma D 1.0 Pf6N2E2_5396 YheO-like PAS domain 0.29 20
Pseudomonas sp. RS175 0.99 PFR28_04361 Regulator of sigma D 0.93 PFR28_03547 Transcriptional regulator DauR low > 88
Pseudomonas fluorescens FW300-N2C3 0.97 AO356_12810 transcriptional regulator 0.98 AO356_17355 hypothetical protein 0.29 33
Pseudomonas fluorescens FW300-N1B4 0.93 Pf1N1B4_2190 Regulator of sigma D 0.92 Pf1N1B4_923 YheO-like PAS domain low > 87
Pseudomonas fluorescens GW456-L13 0.93 PfGW456L13_861 Regulator of sigma D 0.90 PfGW456L13_1693 YheO-like PAS domain low > 87
Pseudomonas fluorescens FW300-N2E3 0.92 AO353_08965 transcriptional regulator 0.90 AO353_04640 hypothetical protein low > 101
Pseudomonas simiae WCS417 0.86 PS417_27505 transcriptional regulator 0.88 PS417_10905 hypothetical protein low > 88
Pseudomonas fluorescens SBW25 0.85 PFLU_RS29185 Rsd/AlgQ family anti-sigma factor 0.24 PFLU_RS27750 hypothetical protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.85 PFLU_RS29185 Rsd/AlgQ family anti-sigma factor 0.24 PFLU_RS27750 hypothetical protein low > 109
Pseudomonas sp. S08-1 0.70 OH686_13925 Alginate regulatory protein AlgQ, positive transcriptional regulator of AlgD 0.79 OH686_07030 YheO-like PAS domain low > 80
Pseudomonas putida KT2440 0.64 PP_0191 Transcriptional regulatory protein AlgQ 0.60 PP_3192 conserved protein of unknown function low > 96
Shewanella sp. ANA-3 0.32 Shewana3_0434 anti-RNA polymerase sigma 70 factor (RefSeq) 0.16 Shewana3_2973 YheO domain-containing protein (RefSeq) low > 73
Klebsiella michiganensis M5al 0.30 BWI76_RS01560 Rsd/AlgQ family anti-sigma factor 0.16 BWI76_RS25905 hypothetical protein low > 92
Shewanella oneidensis MR-1 0.30 SO0433 rsd regulator of sigma D (NCBI ptt file) 0.16 SO1402 conserved hypothetical protein (NCBI ptt file) low > 76
Serratia liquefaciens MT49 0.28 IAI46_01325 Rsd/AlgQ family anti-sigma factor 0.58 IAI46_12675 PAS domain-containing protein low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.27 GFF4197 Regulator of sigma D 0.16 GFF3726 YheO-like PAS domain low > 78
Pantoea sp. MT58 0.27 IAI47_18080 Rsd/AlgQ family anti-sigma factor 0.15 IAI47_02055 transcriptional regulator low > 76
Pectobacterium carotovorum WPP14 0.26 HER17_RS20375 Rsd/AlgQ family anti-sigma factor 0.16 HER17_RS02010 transcriptional regulator low > 75
Enterobacter sp. TBS_079 0.26 MPMX20_00218 Regulator of sigma D 0.15 MPMX20_04239 Transcriptional regulator DauR low > 85
Vibrio cholerae E7946 ATCC 55056 0.26 CSW01_01710 Rsd/AlgQ family anti-sigma factor 0.17 CSW01_01875 hypothetical protein low > 62
Rahnella sp. WP5 0.25 EX31_RS16820 Rsd/AlgQ family anti-sigma factor 0.15 EX31_RS04470 transcriptional regulator low > 89
Enterobacter asburiae PDN3 0.25 EX28DRAFT_4537 Regulator of sigma D 0.15 EX28DRAFT_4184 Uncharacterized protein conserved in bacteria low > 76
Escherichia coli ECRC98 0.25 JDDGAC_16995 rsd sigma D regulator 0.16 JDDGAC_20930 yheO Uncharacterized protein YheO low > 86
Escherichia coli ECOR38 0.25 HEPCGN_12005 rsd sigma D regulator 0.16 HEPCGN_16130 yheO Uncharacterized protein YheO low > 87
Escherichia coli ECRC101 0.25 MCAODC_03870 rsd sigma D regulator 0.16 MCAODC_07830 yheO Uncharacterized protein YheO low > 87
Escherichia coli ECRC62 0.25 BNILDI_06010 rsd sigma D regulator 0.16 BNILDI_02420 yheO Uncharacterized protein YheO low > 75
Escherichia coli ECRC99 0.25 KEDOAH_14790 rsd sigma D regulator 0.16 KEDOAH_10840 yheO Uncharacterized protein YheO — —
Escherichia coli ECOR27 0.25 NOLOHH_05515 rsd sigma D regulator 0.16 NOLOHH_09100 yheO Uncharacterized protein YheO low > 75
Escherichia coli ECRC102 0.25 NIAGMN_11120 rsd sigma D regulator 0.16 NIAGMN_15070 yheO Uncharacterized protein YheO — —
Escherichia coli ECRC100 0.25 OKFHMN_13370 rsd sigma D regulator 0.16 OKFHMN_17300 yheO Uncharacterized protein YheO low > 80
Escherichia coli BL21 0.25 ECD_03872 stationary phase protein, binds sigma 70 RNA polymerase subunit 0.16 ECD_03197 putative PAS domain-containing DNA-binding transcriptional regulator low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.25 OHPLBJKB_04055 Regulator of sigma D 0.16 OHPLBJKB_00357 Transcriptional regulator DauR low > 73
Escherichia coli BW25113 0.25 b3995 rsd stationary phase protein, binds sigma 70 RNA polymerase subunit (NCBI) 0.16 b3346 yheO orf, hypothetical protein (VIMSS) low > 76
Escherichia fergusonii Becca 0.24 EFB2_04616 Regulator of sigma D 0.16 EFB2_00477 Transcriptional regulator DauR low > 86
Escherichia coli Nissle 1917 0.24 ECOLIN_RS23045 sigma D regulator 0.16 ECOLIN_RS19165 transcriptional regulator low > 55
Erwinia tracheiphila SCR3 0.22 LU632_RS00975 Rsd/AlgQ family anti-sigma factor 0.15 LU632_RS22710 transcriptional regulator low > 74
Dickeya dianthicola 67-19 0.20 HGI48_RS01175 sigma D regulator 0.16 HGI48_RS19440 transcriptional regulator low > 71
Dickeya dadantii 3937 0.20 DDA3937_RS01180 Rsd/AlgQ family anti-sigma factor 0.16 DDA3937_RS08080 PAS domain-containing protein low > 74
Dickeya dianthicola ME23 0.20 DZA65_RS01220 Rsd/AlgQ family anti-sigma factor 0.16 DZA65_RS20560 transcriptional regulator low > 75

Not shown: 7 genomes with orthologs for Pf6N2E2_4435 only; 17 genomes with orthologs for Pf6N2E2_5396 only