Conservation of cofitness between Pf1N1B4_2147 and Pf1N1B4_905 in Pseudomonas fluorescens FW300-N1B4

32 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N1B4 1.0 Pf1N1B4_2147 Putrescine utilization regulator 1.0 Pf1N1B4_905 Nucleoid-associated protein 0.35 9
Pseudomonas fluorescens SBW25 0.99 PFLU_RS29365 cupin domain-containing protein 0.97 PFLU_RS05205 nucleoid-associated protein YejK low > 109
Pseudomonas fluorescens SBW25-INTG 0.99 PFLU_RS29365 cupin domain-containing protein 0.97 PFLU_RS05205 nucleoid-associated protein YejK low > 109
Pseudomonas simiae WCS417 0.99 PS417_27690 XRE family transcriptional regulator 0.97 PS417_05135 nucleoid-associated protein low > 88
Pseudomonas fluorescens FW300-N2C3 0.98 AO356_12635 XRE family transcriptional regulator 0.97 AO356_17440 nucleoid-associated protein low > 104
Pseudomonas fluorescens FW300-N2E2 0.98 Pf6N2E2_4394 Putrescine utilization regulator 0.97 Pf6N2E2_5414 Nucleoid-associated protein low > 103
Pseudomonas fluorescens FW300-N2E3 0.98 AO353_09140 XRE family transcriptional regulator 0.98 AO353_04565 nucleoid-associated protein low > 101
Pseudomonas fluorescens GW456-L13 0.98 PfGW456L13_815 Putrescine utilization regulator 0.97 PfGW456L13_1708 Nucleoid-associated protein low > 87
Pseudomonas sp. RS175 0.97 PFR28_04396 HTH-type transcriptional regulator PuuR 0.97 PFR28_03534 Nucleoid-associated protein YejK low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.90 Psyr_0238 Helix-turn-helix motif protein 0.95 Psyr_1083 37kDa nucleoid-associated bacterial protein low > 86
Pseudomonas syringae pv. syringae B728a 0.90 Psyr_0238 Helix-turn-helix motif protein 0.95 Psyr_1083 37kDa nucleoid-associated bacterial protein low > 86
Pseudomonas putida KT2440 0.89 PP_5268 DNA-binding transcriptional repressor PuuR-putrescine 0.90 PP_0973 Nucleoid-associated protein PP_0973 low > 96
Pseudomonas sp. S08-1 0.83 OH686_13700 Putrescine utilization regulator 0.85 OH686_17845 Nucleoid-associated protein NdpA low > 80
Pseudomonas stutzeri RCH2 0.83 Psest_3791 Predicted transcriptional regulators 0.88 Psest_1222 Nucleoid-associated protein low > 67
Shewanella oneidensis MR-1 0.71 SO1265 transcriptional regulator, putative (NCBI ptt file) 0.34 SO2177 conserved hypothetical protein (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.70 Shew_0970 XRE family transcriptional regulator (RefSeq) 0.33 Shew_1472 nucleoid-associated protein NdpA (RefSeq) 0.44 50
Shewanella sp. ANA-3 0.70 Shewana3_3100 XRE family transcriptional regulator (RefSeq) 0.34 Shewana3_2426 nucleoid-associated protein NdpA (RefSeq) low > 73
Shewanella amazonensis SB2B 0.70 Sama_2646 XRE family transcriptional regulator (RefSeq) 0.35 Sama_1557 nucleoid-associated protein NdpA (RefSeq) low > 62
Pantoea sp. MT58 0.41 IAI47_07115 HTH-type transcriptional regulator PuuR 0.30 IAI47_06570 nucleoid-associated protein YejK low > 76
Escherichia coli ECOR38 0.37 HEPCGN_25765 puuR HTH-type transcriptional regulator PuuR 0.30 HEPCGN_22610 yejK nucleoid-associated protein YejK low > 87
Escherichia coli ECRC101 0.37 MCAODC_15835 puuR HTH-type transcriptional regulator PuuR 0.30 MCAODC_14395 yejK nucleoid-associated protein YejK low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.37 OHPLBJKB_02383 HTH-type transcriptional regulator PuuR 0.30 OHPLBJKB_01523 Nucleoid-associated protein YejK low > 73
Escherichia coli ECRC102 0.37 NIAGMN_26605 puuR HTH-type transcriptional regulator PuuR 0.30 NIAGMN_21110 yejK nucleoid-associated protein YejK — —
Rahnella sp. WP5 0.37 EX31_RS17905 HTH-type transcriptional regulator PuuR 0.31 EX31_RS19210 nucleoid-associated protein YejK low > 89
Escherichia coli ECOR27 0.37 NOLOHH_20120 puuR HTH-type transcriptional regulator PuuR 0.30 NOLOHH_14920 yejK nucleoid-associated protein YejK low > 75
Escherichia coli ECRC98 0.37 JDDGAC_04980 puuR HTH-type transcriptional regulator PuuR 0.30 JDDGAC_27305 yejK nucleoid-associated protein YejK low > 86
Escherichia coli ECRC100 0.37 OKFHMN_02435 puuR HTH-type transcriptional regulator PuuR 0.30 OKFHMN_23345 yejK nucleoid-associated protein YejK 0.73 35
Enterobacter asburiae PDN3 0.37 EX28DRAFT_1500 Predicted transcriptional regulators 0.30 EX28DRAFT_0375 Nucleoid-associated protein low > 76
Escherichia coli ECRC62 0.37 BNILDI_18270 puuR HTH-type transcriptional regulator PuuR 0.30 BNILDI_13840 yejK nucleoid-associated protein YejK low > 75
Escherichia coli BW25113 0.37 b1299 puuR DNA-binding transcriptional repressor (NCBI) 0.30 b2186 yejK nucleoid-associated protein NdpA (NCBI) low > 76
Escherichia coli BL21 0.37 ECD_01276 repressor for the divergent puu operons, putrescine inducible 0.30 ECD_02116 spermidine nucleoid-associated protein low > 61
Escherichia coli ECRC99 0.37 KEDOAH_26340 puuR HTH-type transcriptional regulator PuuR 0.30 KEDOAH_04840 yejK nucleoid-associated protein YejK — —
Serratia liquefaciens MT49 0.37 IAI46_17165 HTH-type transcriptional regulator PuuR 0.29 IAI46_17360 nucleoid-associated protein YejK low > 86

Not shown: 24 genomes with orthologs for Pf1N1B4_2147 only; 12 genomes with orthologs for Pf1N1B4_905 only