| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_1637 | | Transcriptional regulator, LysR family | 1.0 | PP_4696 | | Nitrogen regulation protein NR(I) | 0.23 | 11 |
| Pseudomonas fluorescens SBW25 | 0.91 | PFLU_RS05920 | | LysR family transcriptional regulator | 0.87 | PFLU_RS25735 | | sigma-54-dependent Fis family transcriptional regulator | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.91 | PFLU_RS05920 | | LysR family transcriptional regulator | 0.87 | PFLU_RS25735 | | sigma-54-dependent Fis family transcriptional regulator | low | > 109 |
| Pseudomonas simiae WCS417 | 0.91 | PS417_05850 | | LysR family transcriptional regulator | 0.86 | PS417_23895 | | Fis family transcriptional regulator | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.90 | Pf1N1B4_3152 | | LysR family transcriptional regulator PA3398 | 0.88 | Pf1N1B4_2858 | | Two-component sensor CbrB: intrcellular carbon:nitrogen balance | 0.59 | 20 |
| Pseudomonas sp. RS175 | 0.89 | PFR28_00480 | | HTH-type transcriptional activator CmpR | 0.88 | PFR28_03718 | | Transcriptional regulatory protein ZraR | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.89 | AO353_16845 | | LysR family transcriptional regulator | 0.87 | AO353_14400 | | Fis family transcriptional regulator | 0.42 | 72 |
| Pseudomonas fluorescens FW300-N2C3 | 0.89 | AO356_05630 | | LysR family transcriptional regulator | 0.87 | AO356_16075 | | Fis family transcriptional regulator | 0.37 | 64 |
| Pseudomonas fluorescens FW300-N2E2 | 0.89 | Pf6N2E2_2984 | | LysR family transcriptional regulator PA3398 | 0.87 | Pf6N2E2_5156 | | Two-component sensor CbrB: intrcellular carbon:nitrogen balance | low | > 103 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.88 | Psyr_1386 | | transcriptional regulator, LysR family | 0.83 | Psyr_0831 | | Two-component response regulator CbrB | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.88 | Psyr_1386 | | transcriptional regulator, LysR family | 0.83 | Psyr_0831 | | Two-component response regulator CbrB | low | > 86 |
| Pseudomonas sp. S08-1 | 0.86 | OH686_18820 | | Transcriptional regulator, LysR family | 0.83 | OH686_17260 | | Two-component sensor CbrB: intrcellular carbon:nitrogen balance | low | > 80 |
| Pseudomonas fluorescens GW456-L13 | 0.85 | PfGW456L13_4660 | | LysR family transcriptional regulator PA3398 | 0.85 | PfGW456L13_1524 | | Two-component sensor CbrB: intrcellular carbon:nitrogen balance | 0.39 | 37 |
| Pseudomonas stutzeri RCH2 | 0.80 | Psest_2863 | | Transcriptional regulator | 0.79 | Psest_0999 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | low | > 67 |
| Marinobacter adhaerens HP15 | 0.44 | HP15_2201 | | transcriptional regulator, LysR family | 0.59 | HP15_328 | | two component, sigma54 specific, transcriptional regulator, Fis family | low | > 73 |
| Escherichia coli ECRC101 | 0.38 | MCAODC_14545 | yieE | DNA-binding transcriptional regulator YeiE | 0.33 | MCAODC_03820 | zraR | sigma-54-dependent response regulator transcription factor ZraR | — | — |
| Escherichia coli Nissle 1917 | 0.38 | ECOLIN_RS12630 | | DNA-binding transcriptional regulator YeiE | 0.34 | ECOLIN_RS23090 | | sigma-54-dependent response regulator transcription factor ZraR | low | > 52 |
| Escherichia coli ECRC99 | 0.38 | KEDOAH_04690 | yieE | DNA-binding transcriptional regulator YeiE | 0.33 | KEDOAH_14840 | zraR | sigma-54-dependent response regulator transcription factor ZraR | — | — |
| Escherichia coli ECRC101 | 0.38 | OKFHMN_23495 | yieE | DNA-binding transcriptional regulator YeiE | 0.33 | OKFHMN_13320 | zraR | sigma-54-dependent response regulator transcription factor ZraR | — | — |
| Escherichia coli ECRC98 | 0.38 | JDDGAC_27455 | yieE | DNA-binding transcriptional regulator YeiE | 0.33 | JDDGAC_16945 | zraR | sigma-54-dependent response regulator transcription factor ZraR | — | — |
| Escherichia coli ECRC102 | 0.38 | NIAGMN_21260 | yieE | DNA-binding transcriptional regulator YeiE | 0.33 | NIAGMN_11070 | zraR | sigma-54-dependent response regulator transcription factor ZraR | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.37 | GFF3777 | | LysR family transcriptional regulator YeiE | 0.34 | GFF4188 | | Response regulator of zinc sigma-54-dependent two-component system | low | > 78 |
| Ralstonia solanacearum GMI1000 | 0.36 | RS_RS05515 | | LysR family transcriptional regulator | 0.32 | RS_RS25105 | | sigma-54-dependent Fis family transcriptional regulator | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.36 | RPSI07_RS18655 | | LysR family transcriptional regulator | 0.32 | RPSI07_RS07835 | | sigma-54-dependent Fis family transcriptional regulator | low | > 81 |
| Escherichia coli ECOR27 | 0.35 | NOLOHH_15070 | yieE | DNA-binding transcriptional regulator YeiE | 0.34 | NOLOHH_05465 | zraR | sigma-54-dependent response regulator transcription factor ZraR | low | > 57 |
| Ralstonia solanacearum UW163 | 0.35 | UW163_RS12175 | | LysR family transcriptional regulator | 0.32 | UW163_RS16565 | | sigma-54-dependent Fis family transcriptional regulator | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.35 | RALBFv3_RS14705 | | LysR family transcriptional regulator | 0.32 | RALBFv3_RS23315 | | sigma-54-dependent Fis family transcriptional regulator | low | > 76 |
| Ralstonia sp. UNC404CL21Col | 0.34 | ABZR87_RS10365 | | LysR family transcriptional regulator | 0.31 | ABZR87_RS23515 | | sigma-54 dependent transcriptional regulator | low | > 80 |
| Desulfovibrio vulgaris Miyazaki F | 0.22 | DvMF_0108 | | transcriptional regulator, LysR family (RefSeq) | 0.35 | DvMF_2149 | | two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq) | low | > 51 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.21 | ABZR88_RS12590 | | LysR family transcriptional regulator | 0.31 | ABZR88_RS00090 | | sigma-54 dependent transcriptional regulator | low | > 71 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.17 | CA264_07870 | | LysR family transcriptional regulator | 0.32 | CA264_16520 | | DNA-binding response regulator | low | > 74 |
Not shown: 43 genomes with orthologs for PP_1637 only; 9 genomes with orthologs for PP_4696 only