Conservation of cofitness between PP_5085 and PP_4116 in Pseudomonas putida KT2440

20 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5085 malic enzyme B 1.0 PP_4116 isocitrate lyase 0.66 2
Pseudomonas fluorescens FW300-N1B4 0.93 Pf1N1B4_1545 NADP-dependent malic enzyme (EC 1.1.1.40) 0.96 Pf1N1B4_4042 Isocitrate lyase (EC 4.1.3.1) (from data) low > 87
Pseudomonas fluorescens FW300-N2C3 0.92 AO356_09425 malate dehydrogenase 0.96 AO356_22080 isocitrate lyase low > 104
Pseudomonas fluorescens FW300-N2E2 0.92 Pf6N2E2_3762 NADP-dependent malic enzyme (EC 1.1.1.40) 0.96 Pf6N2E2_279 Isocitrate lyase (EC 4.1.3.1) 0.24 57
Pseudomonas stutzeri RCH2 0.92 Psest_3721 Malic enzyme 0.15 Psest_2014 Isocitrate lyase (EC 4.1.3.1) (from data) low > 67
Pseudomonas sp. RS175 0.92 PFR28_05005 NADP-dependent malic enzyme 0.96 PFR28_02625 Isocitrate lyase low > 88
Pseudomonas fluorescens GW456-L13 0.92 PfGW456L13_283 NADP-dependent malic enzyme (EC 1.1.1.40) 0.97 PfGW456L13_2633 Isocitrate lyase (EC 4.1.3.1) low > 87
Pseudomonas fluorescens FW300-N2E3 0.92 AO353_12460 malate dehydrogenase 0.97 AO353_27735 isocitrate lyase low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.91 Psyr_0401 Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+) 0.96 Psyr_3196 isocitrate lyase low > 86
Pseudomonas syringae pv. syringae B728a 0.91 Psyr_0401 Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+) 0.96 Psyr_3196 isocitrate lyase 0.61 5
Pseudomonas fluorescens SBW25 0.91 PFLU_RS01995 malate dehydrogenase 0.97 PFLU_RS18610 isocitrate lyase low > 109
Pseudomonas fluorescens SBW25-INTG 0.91 PFLU_RS01995 malate dehydrogenase 0.97 PFLU_RS18610 isocitrate lyase low > 109
Pseudomonas simiae WCS417 0.90 PS417_01950 malate dehydrogenase 0.97 PS417_16570 isocitrate lyase 0.32 11
Pseudomonas sp. S08-1 0.88 OH686_10060 NADP-dependent malic enzyme 0.15 OH686_00170 Isocitrate lyase low > 80
Marinobacter adhaerens HP15 0.75 HP15_472 malate dehydrogenase (oxaloacetate-decarboxylating), NADP(+) 0.14 HP15_3234 isocitrate lyase low > 73
Alteromonas macleodii MIT1002 0.69 MIT1002_03668 NADP-dependent malic enzyme 0.15 MIT1002_02831 Isocitrate lyase low > 70
Shewanella loihica PV-4 0.66 Shew_0383 malate dehydrogenase (RefSeq) 0.78 Shew_1276 Isocitrate lyase (EC 4.1.3.1) (from data) low > 60
Shewanella amazonensis SB2B 0.66 Sama_0448 malate dehydrogenase (RefSeq) 0.78 Sama_2380 Isocitrate lyase (EC 4.1.3.1) (from data) low > 62
Shewanella oneidensis MR-1 0.65 SO4118 malate oxidoreductase, putative (NCBI ptt file) 0.77 SO1484 aceA Isocitrate lyase (EC 4.1.3.1) (from data) low > 76
Shewanella sp. ANA-3 0.64 Shewana3_3669 malic enzyme, NAD-binding (RefSeq) 0.77 Shewana3_2942 isocitrate lyase (RefSeq) low > 73
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_13540 malate dehydrogenase 0.78 CSW01_03830 isocitrate lyase low > 62

Not shown: 4 genomes with orthologs for PP_5085 only; 59 genomes with orthologs for PP_4116 only