Conservation of cofitness between PP_3378 and PP_3260 in Pseudomonas putida KT2440

24 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_3378 putative 2-ketogluconokinase 1.0 PP_3260 DNA ligase D 0.17 18
Pseudomonas simiae WCS417 0.68 PS417_12565 2-dehydro-3-deoxygluconokinase 0.54 PS417_13125 ATP-dependent DNA ligase low > 88
Pseudomonas fluorescens FW300-N1B4 0.68 Pf1N1B4_4765 2-ketogluconate kinase (EC 2.7.1.13) 0.66 Pf1N1B4_4314 ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD low > 87
Pseudomonas fluorescens SBW25-INTG 0.68 PFLU_RS13250 sugar kinase 0.54 PFLU_RS14185 DNA ligase D low > 109
Pseudomonas fluorescens SBW25 0.68 PFLU_RS13250 sugar kinase 0.54 PFLU_RS14185 DNA ligase D low > 109
Pseudomonas fluorescens FW300-N2E2 0.67 Pf6N2E2_629 2-ketogluconate kinase (EC 2.7.1.13) 0.66 Pf6N2E2_1216 ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD low > 103
Pseudomonas fluorescens FW300-N2C3 0.66 AO356_24685 2-dehydro-3-deoxygluconokinase 0.67 AO356_26950 ATP-dependent DNA ligase low > 104
Pseudomonas sp. RS175 0.66 PFR28_01598 2-dehydro-3-deoxygluconokinase 0.67 PFR28_02106 Multifunctional non-homologous end joining protein LigD low > 88
Burkholderia phytofirmans PsJN 0.59 BPHYT_RS11300 2-dehydro-3-deoxygluconokinase 0.48 BPHYT_RS09215 ATP-dependent DNA ligase — —
Paraburkholderia sabiae LMG 24235 0.57 QEN71_RS35755 sugar kinase 0.51 QEN71_RS22145 DNA ligase D low > 153
Ralstonia sp. UNC404CL21Col 0.56 ABZR87_RS09020 sugar kinase 0.55 ABZR87_RS08115 DNA ligase D low > 80
Herbaspirillum seropedicae SmR1 0.54 HSERO_RS07545 2-dehydro-3-deoxygluconokinase 0.41 HSERO_RS11360 DNA ligase low > 78
Cupriavidus basilensis FW507-4G11 0.53 RR42_RS09470 2-dehydro-3-deoxygluconokinase 0.42 RR42_RS37085 ATP-dependent DNA ligase low > 128
Variovorax sp. SCN45 0.53 GFF2716 2-dehydro-3-deoxygluconokinase (EC 2.7.1.45) 0.48 GFF6242 ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD low > 127
Dyella japonica UNC79MFTsu3.2 0.19 ABZR86_RS12620 sugar kinase 0.33 ABZR86_RS02935 DNA ligase D low > 74
Bosea sp. OAE506 0.19 ABIE41_RS11025 sugar kinase 0.34 ABIE41_RS04575 DNA ligase D low > 77
Sinorhizobium meliloti 1021 0.18 SM_b21374 tagatose kinase (EC 2.7.1.101) (from data) 0.34 SMc03959 hypothetical protein low > 103
Hydrogenophaga sp. GW460-11-11-14-LB1 0.17 GFF178 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) 0.44 GFF111 ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD low > 90
Ralstonia solanacearum PSI07 0.16 RPSI07_RS05445 sugar kinase 0.54 RPSI07_RS21105 DNA ligase D low > 81
Rhizobium sp. OAE497 0.15 ABIE40_RS02140 carbohydrate kinase 0.35 ABIE40_RS26435 DNA ligase D — —
Agrobacterium fabrum C58 0.14 Atu3166 fructokinase 0.35 Atu4632 ATP-dependent DNA ligase low > 89
Sphingomonas koreensis DSMZ 15582 0.12 Ga0059261_2965 Sugar kinases, ribokinase family 0.33 Ga0059261_3858 DNA ligase D low > 68
Rhodopseudomonas palustris CGA009 0.12 TX73_024175 sugar kinase 0.29 TX73_018915 DNA ligase D low > 86
Xanthomonas campestris pv. campestris strain 8004 0.10 Xcc-8004.157.1 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) 0.30 Xcc-8004.2247.1 ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD low > 74
Mucilaginibacter yixingensis YX-36 DSM 26809 0.09 ABZR88_RS00870 sugar kinase 0.28 ABZR88_RS15285 DNA ligase D low > 71

Not shown: 47 genomes with orthologs for PP_3378 only; 8 genomes with orthologs for PP_3260 only