Conservation of cofitness between PP_4778 and PP_2738 in Pseudomonas putida KT2440

23 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4778 23S rRNA pseudouridine 2457 synthase 1.0 PP_2738 putative Transcriptional regulator 0.14 10
Pseudomonas syringae pv. syringae B728a 0.86 Psyr_4336 ribosomal large subunit pseudouridine synthase E 0.62 Psyr_0960 conserved hypothetical protein low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.86 Psyr_4336 ribosomal large subunit pseudouridine synthase E 0.62 Psyr_0960 conserved hypothetical protein low > 86
Pseudomonas fluorescens FW300-N2C3 0.86 AO356_15455 pseudouridine synthase 0.71 AO356_25335 transcriptional regulator low > 104
Pseudomonas sp. RS175 0.86 PFR28_03839 Ribosomal large subunit pseudouridine synthase E 0.79 PFR28_02034 hypothetical protein low > 88
Pseudomonas fluorescens SBW25 0.85 PFLU_RS26510 pseudouridine synthase 0.59 PFLU_RS03710 nuclear transport factor 2 family protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.85 PFLU_RS26510 pseudouridine synthase 0.59 PFLU_RS03710 nuclear transport factor 2 family protein low > 109
Pseudomonas simiae WCS417 0.84 PS417_24580 pseudouridine synthase 0.60 PS417_03660 transcriptional regulator low > 88
Pseudomonas fluorescens FW300-N2E2 0.84 Pf6N2E2_5028 Ribosomal large subunit pseudouridine synthase E (EC 4.2.1.70) 0.68 Pf6N2E2_1346 FIG002994: Putative transcriptional regulator low > 103
Pseudomonas stutzeri RCH2 0.81 Psest_0568 pseudouridine synthase 0.58 Psest_2398 SnoaL-like polyketide cyclase. low > 67
Pseudomonas sp. S08-1 0.77 OH686_08840 LSU rRNA pseudouridine(2457) synthase 0.61 OH686_07855 Putative transcriptional regulator low > 80
Alteromonas macleodii MIT1002 0.61 MIT1002_01829 Ribosomal large subunit pseudouridine synthase E 0.24 MIT1002_02684 SnoaL-like domain protein low > 70
Azospirillum sp. SherDot2 0.60 MPMX19_00077 Ribosomal large subunit pseudouridine synthase E 0.18 MPMX19_05737 hypothetical protein low > 112
Vibrio cholerae E7946 ATCC 55056 0.60 CSW01_05785 23S rRNA pseudouridine synthase E 0.36 CSW01_05675 nuclear transport factor 2 family protein low > 62
Shewanella amazonensis SB2B 0.59 Sama_2060 pseudouridylate synthase (RefSeq) 0.44 Sama_0812 transcriptional regulator-related protein (RefSeq) low > 62
Klebsiella michiganensis M5al 0.58 BWI76_RS11325 23S rRNA pseudouridine synthase E 0.33 BWI76_RS12585 transcriptional regulator — —
Enterobacter asburiae PDN3 0.57 EX28DRAFT_1795 pseudouridine synthase 0.33 EX28DRAFT_1375 SnoaL-like domain low > 76
Enterobacter sp. TBS_079 0.57 MPMX20_01819 Ribosomal large subunit pseudouridine synthase E 0.31 MPMX20_02173 hypothetical protein low > 85
Acidovorax sp. GW101-3H11 0.57 Ac3H11_10 Ribosomal large subunit pseudouridine synthase E (EC 4.2.1.70) 0.25 Ac3H11_1223 FIG002994: Putative transcriptional regulator low > 79
Rahnella sp. WP5 0.55 EX31_RS24585 23S rRNA pseudouridine(2457) synthase RluE 0.31 EX31_RS23995 nuclear transport factor 2 family protein low > 89
Erwinia tracheiphila SCR3 0.54 LU632_RS14565 rluE 23S rRNA pseudouridine(2457) synthase RluE 0.31 LU632_RS09380 nuclear transport factor 2 family protein low > 74
Pectobacterium carotovorum WPP14 0.53 HER17_RS11615 23S rRNA pseudouridine(2457) synthase RluE 0.30 HER17_RS10570 nuclear transport factor 2 family protein low > 75
Rhodospirillum rubrum S1H 0.52 Rru_A1939 Pseudouridine synthase, Rsu (NCBI) 0.19 Rru_A0728 hypothetical protein (NCBI) low > 58
Herbaspirillum seropedicae SmR1 0.49 HSERO_RS07010 pseudouridine synthase 0.24 HSERO_RS05300 isomerase low > 78

Not shown: 39 genomes with orthologs for PP_4778 only; 6 genomes with orthologs for PP_2738 only