Conservation of cofitness between PP_0120 and PP_1063 in Pseudomonas putida KT2440

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0120 putative zinc ABC transporter 1.0 PP_1063 DNA-binding transcriptional regulator, homocysteine-binding 0.39 4
Pseudomonas fluorescens FW300-N1B4 0.79 Pf1N1B4_1872 Zinc ABC transporter, periplasmic-binding protein ZnuA 0.95 Pf1N1B4_784 Transcriptional activator MetR low > 87
Pseudomonas fluorescens GW456-L13 0.79 PfGW456L13_597 Zinc ABC transporter, periplasmic-binding protein ZnuA 0.95 PfGW456L13_4778 Transcriptional activator MetR low > 87
Pseudomonas fluorescens FW300-N2E3 0.76 AO353_10915 ABC transporter substrate-binding protein 0.95 AO353_16210 XRE family transcriptional regulator low > 101
Pseudomonas fluorescens SBW25-INTG 0.75 PFLU_RS00380 zinc ABC transporter substrate-binding protein ZnuA 0.95 PFLU_RS05540 LysR family transcriptional regulator low > 109
Pseudomonas fluorescens SBW25 0.75 PFLU_RS00380 zinc ABC transporter substrate-binding protein ZnuA 0.95 PFLU_RS05540 LysR family transcriptional regulator low > 109
Pseudomonas sp. RS175 0.75 PFR28_04621 High-affinity zinc uptake system protein ZnuA 0.96 PFR28_03478 HTH-type transcriptional regulator MetR low > 88
Pseudomonas fluorescens FW300-N2E2 0.74 Pf6N2E2_4165 Zinc ABC transporter, periplasmic-binding protein ZnuA 0.95 Pf6N2E2_5471 Transcriptional activator MetR low > 103
Pseudomonas fluorescens FW300-N2C3 0.73 AO356_11480 ABC transporter substrate-binding protein 0.95 AO356_17735 XRE family transcriptional regulator low > 104
Pseudomonas syringae pv. syringae B728a 0.73 Psyr_0275 Periplasmic solute binding protein 0.94 Psyr_3917 transcriptional regulator, LysR family low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.73 Psyr_0275 Periplasmic solute binding protein 0.94 Psyr_3917 transcriptional regulator, LysR family low > 86
Pseudomonas simiae WCS417 0.70 PS417_00390 ABC transporter substrate-binding protein 0.94 PS417_05455 XRE family transcriptional regulator low > 88
Pseudomonas sp. S08-1 0.67 OH686_12235 Zinc ABC transporter, substrate-binding protein ZnuA 0.90 OH686_20465 Transcriptional activator MetR low > 80
Pseudomonas stutzeri RCH2 0.62 Psest_4307 ABC-type Zn2+ transport system, periplasmic component/surface adhesin 0.90 Psest_1450 Transcriptional regulator
Escherichia coli ECRC102 0.35 NIAGMN_01755 znuA zinc ABC transporter substrate-binding protein ZnuA 0.45 NIAGMN_12085 metR HTH-type transcriptional regulator MetR
Escherichia coli ECRC98 0.35 JDDGAC_00880 znuA zinc ABC transporter substrate-binding protein ZnuA 0.45 JDDGAC_17955 metR HTH-type transcriptional regulator MetR
Escherichia coli ECRC99 0.35 KEDOAH_01800 znuA zinc ABC transporter substrate-binding protein ZnuA 0.45 KEDOAH_13820 metR HTH-type transcriptional regulator MetR
Escherichia coli ECRC101 0.35 MCAODC_19100 znuA zinc ABC transporter substrate-binding protein ZnuA 0.45 MCAODC_04835 metR HTH-type transcriptional regulator MetR
Escherichia coli ECRC101 0.35 OKFHMN_26305 znuA zinc ABC transporter substrate-binding protein ZnuA 0.45 OKFHMN_14330 metR HTH-type transcriptional regulator MetR
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.34 GFF1636 Zinc ABC transporter, periplasmic-binding protein ZnuA 0.44 GFF253 Transcriptional activator MetR 0.35 10
Escherichia coli HS(pFamp)R (ATCC 700891) 0.34 OHPLBJKB_01871 High-affinity zinc uptake system protein ZnuA 0.45 OHPLBJKB_04223 HTH-type transcriptional regulator MetR low > 73
Escherichia fergusonii Becca 0.34 EFB2_02085 High-affinity zinc uptake system protein ZnuA 0.45 EFB2_04809 HTH-type transcriptional regulator MetR low > 86
Escherichia coli BL21 0.34 ECD_01828 zinc ABC transporter periplasmic binding protein 0.45 ECD_03707 methionine biosynthesis regulon transcriptional regulator low > 60
Enterobacter asburiae PDN3 0.34 EX28DRAFT_0699 ABC-type Zn2+ transport system, periplasmic component/surface adhesin 0.45 EX28DRAFT_4493 Transcriptional regulator low > 76
Escherichia coli BW25113 0.34 b1857 yebL putative adhesin (VIMSS) 0.45 b3828 metR DNA-binding transcriptional activator, homocysteine-binding (NCBI) 0.49 7
Escherichia coli ECOR38 0.34 HEPCGN_04710 znuA zinc ABC transporter substrate-binding protein ZnuA 0.45 HEPCGN_13030 metR HTH-type transcriptional regulator MetR low > 85
Escherichia coli Nissle 1917 0.33 ECOLIN_RS10345 zinc ABC transporter substrate-binding protein ZnuA 0.45 ECOLIN_RS30005 HTH-type transcriptional regulator MetR
Escherichia coli ECRC62 0.33 BNILDI_15535 znuA zinc ABC transporter substrate-binding protein ZnuA 0.45 BNILDI_05070 metR HTH-type transcriptional regulator MetR
Escherichia coli ECOR27 0.33 NOLOHH_16745 znuA zinc ABC transporter substrate-binding protein ZnuA 0.45 NOLOHH_06460 metR HTH-type transcriptional regulator MetR low > 57
Klebsiella michiganensis M5al 0.33 BWI76_RS18130 zinc ABC transporter substrate-binding protein 0.42 BWI76_RS01275 LysR family transcriptional regulator low > 92
Pantoea sp. MT58 0.33 IAI47_08465 zinc ABC transporter substrate-binding protein ZnuA 0.43 IAI47_18315 HTH-type transcriptional regulator MetR low > 76
Serratia liquefaciens MT49 0.32 IAI46_14605 zinc ABC transporter substrate-binding protein ZnuA 0.44 IAI46_01030 HTH-type transcriptional regulator MetR low > 86
Dickeya dianthicola ME23 0.31 DZA65_RS10545 zinc ABC transporter substrate-binding protein ZnuA 0.43 DZA65_RS00870 HTH-type transcriptional regulator MetR low > 75
Vibrio cholerae E7946 ATCC 55056 0.31 CSW01_10400 zinc ABC transporter substrate-binding protein 0.51 CSW01_08580 HTH-type transcriptional regulator MetR low > 62
Rahnella sp. WP5 0.29 EX31_RS10675 zinc ABC transporter substrate-binding protein ZnuA 0.43 EX31_RS25370 HTH-type transcriptional regulator MetR low > 89
Azospirillum sp. SherDot2 0.29 MPMX19_05515 High-affinity zinc uptake system protein ZnuA 0.37 MPMX19_00645 HTH-type transcriptional regulator MetR low > 112
Dinoroseobacter shibae DFL-12 0.24 Dshi_1704 periplasmic solute binding protein (RefSeq) 0.46 Dshi_2079 transcriptional regulator, LysR family (RefSeq) low > 64
Acinetobacter radioresistens SK82 0.14 MPMX26_00096 High-affinity zinc uptake system protein ZnuA 0.47 MPMX26_01201 HTH-type transcriptional regulator MetR low > 36

Not shown: 13 genomes with orthologs for PP_0120 only; 15 genomes with orthologs for PP_1063 only