Conservation of cofitness between PP_0165 and PP_0917 in Pseudomonas putida KT2440

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0165 GGDEF domain protein 1.0 PP_0917 Chromosome initiation inhibitor 0.29 16
Pseudomonas sp. RS175 0.78 PFR28_04783 hypothetical protein 0.81 PFR28_00608 HTH-type transcriptional regulator ArgP low > 88
Pseudomonas fluorescens FW300-N2C3 0.78 AO356_10580 hypothetical protein 0.80 AO356_04995 LysR family transcriptional regulator low > 104
Pseudomonas fluorescens FW300-N2E2 0.78 Pf6N2E2_3983 Membrane bound c-di-GMP receptor LapD 0.81 Pf6N2E2_2849 Chromosome initiation inhibitor low > 103
Pseudomonas fluorescens FW300-N2E3 0.77 AO353_11170 hypothetical protein 0.83 AO353_03915 LysR family transcriptional regulator low > 101
Pseudomonas fluorescens FW300-N1B4 0.76 Pf1N1B4_1802 Membrane bound c-di-GMP receptor LapD 0.83 Pf1N1B4_708 Chromosome initiation inhibitor low > 87
Pseudomonas fluorescens GW456-L13 0.75 PfGW456L13_546 Membrane bound c-di-GMP receptor LapD 0.83 PfGW456L13_1782 Chromosome initiation inhibitor low > 87
Pseudomonas sp. S08-1 0.56 OH686_20650 Membrane bound c-di-GMP receptor LapD 0.74 OH686_07195 Transcriptional regulator ArgP, LysR family low > 80
Pectobacterium carotovorum WPP14 0.55 HER17_RS05880 EAL domain-containing protein 0.30 HER17_RS10625 HTH-type transcriptional regulator ArgP low > 75
Pseudomonas stutzeri RCH2 0.51 Psest_1864 diguanylate cyclase (GGDEF) domain 0.74 Psest_1166 transcriptional regulator, ArgP family low > 67
Acidovorax sp. GW101-3H11 0.25 Ac3H11_2106 Membrane bound c-di-GMP receptor LapD 0.36 Ac3H11_3378 chromosome replication initiation inhibitor protein low > 79
Alteromonas macleodii MIT1002 0.22 MIT1002_01618 Cyclic di-GMP phosphodiesterase Gmr 0.30 MIT1002_00129 OriC replication inhibitor low > 70
Marinobacter adhaerens HP15 0.18 HP15_3218 diguanylate cyclase/phosphodiesterase 0.60 HP15_868 transcriptional regulator, LysR family low > 73
Vibrio cholerae E7946 ATCC 55056 0.15 CSW01_19490 GGDEF domain-containing protein 0.31 CSW01_02560 chromosome initiation inhibitor low > 62
Shewanella oneidensis MR-1 0.15 SO4323 GGDEF domain protein (NCBI ptt file) 0.37 SO2866 iciA chromosome initiation inhibitor (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.15 Shew_0307 diguanylate cyclase/phosphodiesterase (RefSeq) 0.37 Shew_1844 chromosome replication initiation inhibitor protein (RefSeq) low > 60
Shewanella sp. ANA-3 0.14 Shewana3_0376 diguanylate cyclase/phosphodiesterase (RefSeq) 0.37 Shewana3_1652 chromosome replication initiation inhibitor protein (RefSeq) low > 73
Shewanella amazonensis SB2B 0.14 Sama_3264 putative diguanylate phosphodiesterase (RefSeq) 0.38 Sama_2987 chromosome replication initiation inhibitor protein (RefSeq) low > 62
Escherichia fergusonii Becca 0.08 EFB2_00579 RNase E specificity factor CsrD 0.27 EFB2_00987 HTH-type transcriptional regulator ArgP low > 86
Escherichia coli Nissle 1917 0.08 ECOLIN_RS18635 RNase E specificity factor CsrD 0.27 ECOLIN_RS16225 DNA-binding transcriptional regulator ArgP — —
Escherichia coli ECOR38 0.08 HEPCGN_16585 csrD RNase E specificity factor CsrD 0.27 HEPCGN_18750 argP DNA-binding transcriptional regulator ArgP low > 85
Escherichia coli BL21 0.08 ECD_03111 targeting factor for csrBC sRNA degradation 0.27 ECD_02747 transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor low > 60
Escherichia coli BW25113 0.08 b3252 yhdA conserved inner membrane protein (NCBI) 0.27 b2916 argP chromosome replication initiation inhibitor protein (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.08 OHPLBJKB_00453 RNase E specificity factor CsrD 0.27 OHPLBJKB_00800 HTH-type transcriptional regulator ArgP 0.55 67
Escherichia coli ECRC99 0.08 KEDOAH_10430 csrD RNase E specificity factor CsrD 0.27 KEDOAH_08690 argP DNA-binding transcriptional regulator ArgP — —
Escherichia coli ECRC101 0.08 MCAODC_08240 csrD RNase E specificity factor CsrD 0.27 MCAODC_09970 argP DNA-binding transcriptional regulator ArgP — —
Escherichia coli ECRC101 0.08 OKFHMN_17720 csrD RNase E specificity factor CsrD 0.27 OKFHMN_19450 argP DNA-binding transcriptional regulator ArgP — —
Escherichia coli ECRC98 0.08 JDDGAC_21345 csrD RNase E specificity factor CsrD 0.27 JDDGAC_23090 argP DNA-binding transcriptional regulator ArgP — —
Escherichia coli ECRC102 0.08 NIAGMN_15480 csrD RNase E specificity factor CsrD 0.27 NIAGMN_17215 argP DNA-binding transcriptional regulator ArgP — —
Escherichia coli ECOR27 0.08 NOLOHH_09505 csrD RNase E specificity factor CsrD 0.27 NOLOHH_11355 argP DNA-binding transcriptional regulator ArgP low > 57
Escherichia coli ECRC62 0.08 BNILDI_02015 csrD RNase E specificity factor CsrD 0.27 BNILDI_09890 argP DNA-binding transcriptional regulator ArgP — —

Not shown: 0 genomes with orthologs for PP_0165 only; 40 genomes with orthologs for PP_0917 only