Conservation of cofitness between OKFHMN_27385 and OKFHMN_10805 in Escherichia coli ECRC100

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli ECRC100 1.0 OKFHMN_27385 purR HTH-type transcriptional repressor PurR 1.0 OKFHMN_10805 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA 0.77 2
Escherichia coli BL21 1.00 ECD_01629 transcriptional repressor, hypoxanthine-binding 0.99 ECD_00060 dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM-dependent low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_02066 HTH-type transcriptional repressor PurR 0.99 OHPLBJKB_03600 Ribosomal large subunit pseudouridine synthase A low > 73
Escherichia coli ECRC62 1.00 BNILDI_16695 purR HTH-type transcriptional repressor PurR 0.99 BNILDI_08455 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 75
Escherichia coli ECOR38 1.00 HEPCGN_05770 purR HTH-type transcriptional repressor PurR 0.99 HEPCGN_08795 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA 0.81 35
Escherichia coli BW25113 1.00 b1658 purR DNA-binding transcriptional repressor, hypoxanthine-binding (NCBI) 0.99 b0058 rluA pseudouridine synthase for 23S rRNA (position 746) and tRNAphe(position 32) (NCBI) low > 76
Escherichia coli ECRC101 1.00 MCAODC_18025 purR HTH-type transcriptional repressor PurR 1.00 MCAODC_01320 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 87
Escherichia coli ECRC102 1.00 NIAGMN_00680 purR HTH-type transcriptional repressor PurR 1.00 NIAGMN_08655 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA — —
Escherichia coli ECRC99 1.00 KEDOAH_00725 purR HTH-type transcriptional repressor PurR 1.00 KEDOAH_17350 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA — —
Escherichia coli ECRC98 1.00 JDDGAC_01975 purR HTH-type transcriptional repressor PurR 1.00 JDDGAC_14400 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 86
Escherichia fergusonii Becca 1.00 EFB2_02334 HTH-type transcriptional repressor PurR 0.98 EFB2_03987 Dual-specificity RNA pseudouridine synthase RluA low > 86
Escherichia coli ECOR27 1.00 NOLOHH_17905 purR HTH-type transcriptional repressor PurR 0.99 NOLOHH_03150 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 75
Escherichia coli Nissle 1917 1.00 ECOLIN_RS09245 HTH-type transcriptional repressor PurR 0.99 ECOLIN_RS00310 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.97 GFF3618 Purine nucleotide synthesis repressor 0.95 GFF184 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) low > 78
Enterobacter asburiae PDN3 0.97 EX28DRAFT_1655 Transcriptional regulators 0.90 EX28DRAFT_3650 pseudouridine synthase, RluA family low > 76
Enterobacter sp. TBS_079 0.96 MPMX20_01978 HTH-type transcriptional repressor PurR 0.89 MPMX20_00752 Dual-specificity RNA pseudouridine synthase RluA low > 85
Klebsiella michiganensis M5al 0.93 BWI76_RS16510 transcriptional repressor PurR 0.93 BWI76_RS04565 bifunctional tRNA pseudouridine(32) synthase/ribosomal large subunit pseudouridine synthase RluA low > 92
Pantoea sp. MT58 0.85 IAI47_10795 HTH-type transcriptional repressor PurR 0.85 IAI47_16060 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 76
Serratia liquefaciens MT49 0.84 IAI46_11240 HTH-type transcriptional repressor PurR 0.73 IAI46_03270 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 86
Rahnella sp. WP5 0.83 EX31_RS13830 HTH-type transcriptional repressor PurR 0.69 EX31_RS03750 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 89
Erwinia tracheiphila SCR3 0.83 LU632_RS11190 purR HTH-type transcriptional repressor PurR 0.81 LU632_RS02800 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA — —
Dickeya dianthicola ME23 0.82 DZA65_RS13140 HTH-type transcriptional repressor PurR 0.77 DZA65_RS19315 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 75
Dickeya dianthicola 67-19 0.82 HGI48_RS12685 HTH-type transcriptional repressor PurR 0.77 HGI48_RS18175 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 71
Dickeya dadantii 3937 0.82 DDA3937_RS12620 HTH-type transcriptional repressor PurR 0.77 DDA3937_RS18240 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 74
Pectobacterium carotovorum WPP14 0.81 HER17_RS09235 HTH-type transcriptional repressor PurR 0.77 HER17_RS02985 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 75
Vibrio cholerae E7946 ATCC 55056 0.51 CSW01_08660 PurR family transcriptional regulator 0.52 CSW01_12700 RNA pseudouridine synthase low > 62
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_20830 LacI family transcriptional regulator 0.45 AO353_02385 pseudouridine synthase — —
Pseudomonas putida KT2440 0.37 PP_2457 DNA-binding transcriptional repressor 0.46 PP_1731 23S rRNA (746) and tRNA (32) pseudouridine synthase low > 96
Pseudomonas fluorescens FW300-N2E2 0.37 Pf6N2E2_164 Ribose operon repressor 0.45 Pf6N2E2_5794 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) low > 103
Pseudomonas fluorescens FW300-N2C3 0.36 AO356_00955 LacI family transcriptional regulator 0.45 AO356_19405 pseudouridine synthase low > 104
Pseudomonas fluorescens SBW25 0.36 PFLU_RS20365 LacI family DNA-binding transcriptional regulator 0.45 PFLU_RS21445 RluA family pseudouridine synthase low > 109
Pseudomonas fluorescens SBW25-INTG 0.36 PFLU_RS20365 LacI family DNA-binding transcriptional regulator 0.45 PFLU_RS21445 RluA family pseudouridine synthase low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.36 Psyr_2154 transcriptional regulator, LacI family 0.46 Psyr_1610 ribosomal large subunit pseudouridine synthase A low > 86
Pseudomonas syringae pv. syringae B728a 0.36 Psyr_2154 transcriptional regulator, LacI family 0.46 Psyr_1610 ribosomal large subunit pseudouridine synthase A low > 86
Pseudomonas simiae WCS417 0.36 PS417_18390 LacI family transcriptional regulator 0.46 PS417_19475 pseudouridine synthase low > 88
Pseudomonas sp. RS175 0.35 PFR28_02734 Ribose operon repressor 0.45 PFR28_03154 Dual-specificity RNA pseudouridine synthase RluA low > 88
Dinoroseobacter shibae DFL-12 0.21 Dshi_2029 transcriptional regulator, LacI family (RefSeq) 0.49 Dshi_3106 pseudouridine synthase (RefSeq) low > 64
Shewanella loihica PV-4 0.21 Shew_1111 LacI family transcription regulator (RefSeq) 0.60 Shew_0783 pseudouridylate synthase (RefSeq) — —

Not shown: 16 genomes with orthologs for OKFHMN_27385 only; 15 genomes with orthologs for OKFHMN_10805 only