| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
| Rhodanobacter sp000427505 FW510-R12 | 1.0 | LRK53_RS15725 | | PTS fructose transporter subunit IIA | 1.0 | LRK53_RS04075 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | 0.78 | 2 |
| Rhodanobacter denitrificans MT42 | 0.94 | LRK55_RS12555 | | PTS fructose transporter subunit IIA | 0.94 | LRK55_RS10880 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | low | > 63 |
| Dyella japonica UNC79MFTsu3.2 | 0.94 | ABZR86_RS19795 | | PTS sugar transporter subunit IIA | 0.80 | ABZR86_RS12410 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | low | > 74 |
| Rhodanobacter denitrificans FW104-10B01 | 0.94 | LRK54_RS12855 | | PTS fructose transporter subunit IIA | 0.94 | LRK54_RS11175 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | low | > 59 |
| Rhodanobacter sp. FW510-T8 | 0.93 | OKGIIK_02245 | manX | PTS fructose IIA subunit family protein | 0.97 | OKGIIK_12700 | aceE | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | low | > 53 |
| Lysobacter sp. OAE881 | 0.51 | ABIE51_RS15990 | | PTS sugar transporter subunit IIA | 0.69 | ABIE51_RS18795 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | — | — |
| Methylophilus sp. DMC18 | 0.36 | GFF2265 | | PTS system mannose-specific EIIAB component | 0.63 | GFF339 | | Pyruvate dehydrogenase E1 component | low | > 43 |
| Herbaspirillum seropedicae SmR1 | 0.35 | HSERO_RS00440 | | PTS fructose transporter subunit IIA | 0.59 | HSERO_RS07305 | | pyruvate dehydrogenase | — | — |
| Variovorax sp. SCN45 | 0.30 | GFF3651 | | PTS system, IIA component | 0.57 | GFF967 | | Pyruvate dehydrogenase E1 component (EC 1.2.4.1) | low | > 127 |
| Ralstonia solanacearum UW163 | 0.30 | UW163_RS02715 | | PTS fructose transporter subunit IIA | 0.58 | UW163_RS14980 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.30 | RALBFv3_RS10865 | | PTS fructose transporter subunit IIA | 0.58 | RALBFv3_RS01670 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | — | — |
| Ralstonia solanacearum PSI07 | 0.30 | RPSI07_RS22445 | | PTS fructose transporter subunit IIA | 0.58 | RPSI07_RS15815 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | — | — |
| Ralstonia solanacearum GMI1000 | 0.30 | RS_RS01705 | | PTS fructose transporter subunit IIA | 0.58 | RS_RS08055 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | — | — |
| Dechlorosoma suillum PS | 0.29 | Dsui_0744 | | phosphotransferase system, mannose/fructose-specific component IIA | 0.58 | Dsui_1578 | | pyruvate dehydrogenase E1 component, homodimeric type | low | > 51 |
| Cupriavidus basilensis FW507-4G11 | 0.29 | RR42_RS01785 | | PTS fructose transporter subunit IIA | 0.59 | RR42_RS07365 | | pyruvate dehydrogenase | low | > 128 |
| Acidovorax sp. GW101-3H11 | 0.28 | Ac3H11_2117 | | PTS system, fructose-specific IIA component | 0.58 | Ac3H11_4093 | | Pyruvate dehydrogenase E1 component (EC 1.2.4.1) | — | — |
| Ralstonia sp. UNC404CL21Col | 0.26 | ABZR87_RS06715 | | PTS sugar transporter subunit IIA | 0.58 | ABZR87_RS13470 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.25 | GFF2929 | | Sugar transport PTS system IIa component | 0.58 | GFF4890 | | Pyruvate dehydrogenase E1 component (EC 1.2.4.1) | — | — |
| Castellaniella sp019104865 MT123 | 0.23 | ABCV34_RS04790 | | PTS sugar transporter subunit IIA | 0.58 | ABCV34_RS04160 | | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | — | — |
| Dinoroseobacter shibae DFL-12 | 0.19 | Dshi_0208 | | PTS system fructose subfamily IIA component (RefSeq) | 0.58 | Dshi_1968 | | 2-oxo-acid dehydrogenase E1 subunit, homodimeric type (RefSeq) | low | > 64 |
Not shown: 13 genomes with orthologs for LRK53_RS15725 only; 65 genomes with orthologs for LRK53_RS04075 only