| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Serratia liquefaciens MT49 | 1.0 | IAI46_03985 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 1.0 | IAI46_17705 | | NADH-quinone oxidoreductase subunit B | 0.61 | 17 |
| Rahnella sp. WP5 | 0.92 | EX31_RS07570 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.92 | EX31_RS19430 | | NADH-quinone oxidoreductase subunit B | low | > 89 |
| Pectobacterium carotovorum WPP14 | 0.91 | HER17_RS05400 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.95 | HER17_RS07130 | | NADH-quinone oxidoreductase subunit B | low | > 75 |
| Dickeya dadantii 3937 | 0.91 | DDA3937_RS16110 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.90 | DDA3937_RS14330 | | NADH-quinone oxidoreductase subunit B | — | — |
| Dickeya dianthicola 67-19 | 0.90 | HGI48_RS16235 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.90 | HGI48_RS14305 | | NADH-quinone oxidoreductase subunit B | low | > 71 |
| Dickeya dianthicola ME23 | 0.90 | DZA65_RS17330 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.90 | DZA65_RS14980 | | NADH-quinone oxidoreductase subunit B | — | — |
| Pantoea sp. MT58 | 0.89 | IAI47_04425 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.93 | IAI47_06365 | | NADH-quinone oxidoreductase subunit B | low | > 76 |
| Escherichia coli ECRC101 | 0.88 | OKFHMN_21250 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.93 | OKFHMN_22845 | nuoB | NADH-quinone oxidoreductase subunit NuoB | — | — |
| Escherichia coli ECRC102 | 0.88 | NIAGMN_19020 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.93 | NIAGMN_20615 | nuoB | NADH-quinone oxidoreductase subunit NuoB | — | — |
| Escherichia coli BL21 | 0.88 | ECD_02484 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | 0.93 | ECD_02212 | | NADH:ubiquinone oxidoreductase, chain B | low | > 60 |
| Escherichia coli ECRC98 | 0.88 | JDDGAC_24915 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.93 | JDDGAC_26810 | nuoB | NADH-quinone oxidoreductase subunit NuoB | — | — |
| Escherichia coli ECRC99 | 0.88 | KEDOAH_06970 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.93 | KEDOAH_05350 | nuoB | NADH-quinone oxidoreductase subunit NuoB | — | — |
| Escherichia coli ECRC101 | 0.88 | MCAODC_11780 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.93 | MCAODC_13885 | nuoB | NADH-quinone oxidoreductase subunit NuoB | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.88 | OHPLBJKB_01112 | | Ribosomal large subunit pseudouridine synthase D | 0.93 | OHPLBJKB_01419 | | NADH-quinone oxidoreductase subunit B | low | > 73 |
| Escherichia coli Nissle 1917 | 0.88 | ECOLIN_RS14675 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.93 | ECOLIN_RS13280 | | NADH-quinone oxidoreductase subunit NuoB | 0.74 | 37 |
| Escherichia coli BW25113 | 0.88 | b2594 | rluD | 23S rRNA pseudouridine synthase (NCBI) | 0.93 | b2287 | nuoB | NADH dehydrogenase subunit B (NCBI) | — | — |
| Escherichia fergusonii Becca | 0.88 | EFB2_01296 | | Ribosomal large subunit pseudouridine synthase D | 0.93 | EFB2_01572 | | NADH-quinone oxidoreductase subunit B | low | > 86 |
| Escherichia coli ECOR38 | 0.88 | HEPCGN_20375 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.93 | HEPCGN_22050 | nuoB | NADH-quinone oxidoreductase subunit NuoB | low | > 85 |
| Enterobacter sp. TBS_079 | 0.88 | MPMX20_03463 | | Ribosomal large subunit pseudouridine synthase D | 0.97 | MPMX20_03217 | | NADH-quinone oxidoreductase subunit B | low | > 85 |
| Enterobacter asburiae PDN3 | 0.87 | EX28DRAFT_2695 | | pseudouridine synthase, RluA family | 0.97 | EX28DRAFT_0322 | | NADH-quinone oxidoreductase, B subunit | 0.71 | 23 |
| Escherichia coli ECOR27 | 0.87 | NOLOHH_12925 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.93 | NOLOHH_14465 | nuoB | NADH-quinone oxidoreductase subunit NuoB | low | > 57 |
| Klebsiella michiganensis M5al | 0.87 | BWI76_RS21450 | | 23S rRNA pseudouridine(1911/1915/1917) synthase | 0.97 | BWI76_RS20185 | | NADH-quinone oxidoreductase subunit B | — | — |
| Escherichia coli ECRC62 | 0.87 | BNILDI_11730 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.93 | BNILDI_13385 | nuoB | NADH-quinone oxidoreductase subunit NuoB | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.87 | GFF4182 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.93 | GFF1890 | | NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) | low | > 78 |
| Erwinia tracheiphila SCR3 | 0.86 | LU632_RS16945 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.94 | LU632_RS07970 | | NADH-quinone oxidoreductase subunit B | low | > 74 |
| Pseudomonas fluorescens FW300-N2C3 | 0.56 | AO356_15925 | | ribosomal large subunit pseudouridine synthase D | 0.83 | AO356_22065 | | NADH dehydrogenase | — | — |
| Pseudomonas sp. S08-1 | 0.55 | OH686_16410 | | LSU rRNA pseudouridine(1911/1915/1917) synthase | 0.82 | OH686_00150 | | NADH-ubiquinone oxidoreductase chain B | low | > 80 |
| Pseudomonas putida KT2440 | 0.55 | PP_0623 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | 0.79 | PP_4120 | | NADH-quinone oxidoreductase subunit B | — | — |
| Pseudomonas simiae WCS417 | 0.55 | PS417_03820 | | ribosomal large subunit pseudouridine synthase D | 0.82 | PS417_16580 | | NADH dehydrogenase | — | — |
| Pseudomonas sp. RS175 | 0.55 | PFR28_03748 | | Ribosomal large subunit pseudouridine synthase D | 0.82 | PFR28_02628 | | NADH-quinone oxidoreductase subunit B | — | — |
| Pseudomonas fluorescens SBW25 | 0.55 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.83 | PFLU_RS18620 | | NADH-quinone oxidoreductase subunit B | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.55 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.83 | PFLU_RS18620 | | NADH-quinone oxidoreductase subunit B | low | > 109 |
| Pseudomonas fluorescens FW300-N2E3 | 0.55 | AO353_14220 | | ribosomal large subunit pseudouridine synthase D | 0.82 | AO353_27745 | | NADH dehydrogenase | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.55 | Pf6N2E2_5127 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.83 | Pf6N2E2_276 | | NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.55 | PfGW456L13_1493 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.83 | PfGW456L13_2632 | | NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.54 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | 0.83 | Psyr_3198 | | NADH dehydrogenase subunit B | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.54 | Pf1N1B4_2822 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.83 | Pf1N1B4_4040 | | NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.54 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | 0.83 | Psyr_3198 | | NADH dehydrogenase subunit B | low | > 86 |
| Acinetobacter radioresistens SK82 | 0.42 | MPMX26_00735 | | Ribosomal large subunit pseudouridine synthase D | 0.70 | MPMX26_02554 | | NADH-quinone oxidoreductase subunit B | — | — |
| Rhodopseudomonas palustris CGA009 | 0.35 | TX73_001905 | | RluA family pseudouridine synthase | 0.49 | TX73_022085 | | NADH-quinone oxidoreductase subunit B | low | > 86 |
| Azospirillum sp. SherDot2 | 0.35 | MPMX19_05442 | | Ribosomal large subunit pseudouridine synthase D | 0.34 | MPMX19_01745 | | NADH-quinone oxidoreductase subunit B | — | — |
| Rhodospirillum rubrum S1H | 0.34 | Rru_A1111 | | Pseudouridine synthase, RluD (NCBI) | 0.34 | Rru_A1556 | | NADH dehydrogenase (ubiquinone), 20 kDa subunit (NCBI) | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.28 | CA264_15205 | | RNA pseudouridine synthase | 0.59 | CA264_04265 | | NADH-quinone oxidoreductase subunit B | low | > 74 |
Not shown: 51 genomes with orthologs for IAI46_03985 only; 1 genomes with orthologs for IAI46_17705 only