Conservation of cofitness between HSERO_RS05945 and HSERO_RS21095 in Herbaspirillum seropedicae SmR1

20 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS05945 hypothetical protein 1.0 HSERO_RS21095 UDP-glucose 4-epimerase 0.23 20
Ralstonia sp. UNC404CL21Col 0.55 ABZR87_RS00330 DNA repair protein RadC 0.65 ABZR87_RS08690 polysaccharide biosynthesis protein low > 80
Cupriavidus basilensis FW507-4G11 0.53 RR42_RS16995 hypothetical protein 0.34 RR42_RS15810 UDP-N-acetylglucosamine 4,6-dehydratase low > 128
Dechlorosoma suillum PS 0.53 Dsui_1537 DNA repair protein radc 0.34 Dsui_0083 UDP-N-acetylglucosamine 4,6-dehydratase low > 51
Pseudomonas sp. RS175 0.49 PFR28_04412 hypothetical protein 0.34 PFR28_00918 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) low > 88
Pseudomonas fluorescens FW300-N1B4 0.48 Pf1N1B4_2126 DNA repair protein RadC 0.33 Pf1N1B4_3585 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) low > 87
Pseudomonas stutzeri RCH2 0.47 Psest_3803 DNA repair protein radc 0.33 Psest_1810 UDP-N-acetylglucosamine 4,6-dehydratase low > 67
Pseudomonas fluorescens SBW25-INTG 0.46 PFLU_RS29445 JAB domain-containing protein 0.66 PFLU_RS08145 NAD-dependent epimerase/dehydratase family protein low > 109
Pseudomonas fluorescens SBW25 0.46 PFLU_RS29445 JAB domain-containing protein 0.66 PFLU_RS08145 NAD-dependent epimerase/dehydratase family protein low > 109
Pseudomonas simiae WCS417 0.45 PS417_27770 hypothetical protein 0.66 PS417_08165 UDP-glucose 4-epimerase low > 88
Pseudomonas fluorescens FW300-N2E2 0.45 Pf6N2E2_4377 DNA repair protein RadC 0.34 Pf6N2E2_2611 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) low > 103
Pseudomonas fluorescens GW456-L13 0.44 PfGW456L13_798 DNA repair protein RadC 0.65 PfGW456L13_2186 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) low > 87
Alteromonas macleodii MIT1002 0.41 MIT1002_00049 DNA repair protein RadC 0.32 MIT1002_01079 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) low > 70
Shewanella loihica PV-4 0.40 Shew_3481 DNA repair protein RadC (RefSeq) 0.35 Shew_1318 polysaccharide biosynthesis protein CapD (RefSeq) low > 60
Escherichia fergusonii Becca 0.37 EFB2_00175 hypothetical protein 0.69 EFB2_01821 UDP-glucose 4-epimerase low > 86
Shewanella oneidensis MR-1 0.37 SO4248 radC DNA repair protein RadC (NCBI ptt file) 0.35 SO3271 polysaccharide biosynthesis protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.37 Shewana3_3770 radC DNA repair protein RadC (RefSeq) 0.35 Shewana3_1302 polysaccharide biosynthesis protein (RefSeq) 0.55 42
Bacteroides thetaiotaomicron VPI-5482 0.29 BT3695 putative DNA repair protein (NCBI ptt file) 0.61 BT0381 capsular polysaccharide biosynthesis protein capD (NCBI ptt file) low > 81
Mucilaginibacter yixingensis YX-36 DSM 26809 0.29 ABZR88_RS01715 DNA repair protein RadC 0.67 ABZR88_RS12770 polysaccharide biosynthesis protein low > 71
Pontibacter actiniarum KMM 6156, DSM 19842 0.28 CA264_13835 hypothetical protein 0.33 CA264_07950 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) low > 74
Azospirillum brasilense Sp245 0.26 AZOBR_RS04400 DNA repair protein RadC 0.31 AZOBR_RS33705 flagellin modification protein FlmA low > 97

Not shown: 71 genomes with orthologs for HSERO_RS05945 only; 3 genomes with orthologs for HSERO_RS21095 only