Conservation of cofitness between HSERO_RS16875 and HSERO_RS14045 in Herbaspirillum seropedicae SmR1

33 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS16875 diguanylate cyclase 1.0 HSERO_RS14045 aldolase 0.31 8
Paraburkholderia sabiae LMG 24235 0.51 QEN71_RS14650 diguanylate cyclase 0.38 QEN71_RS39300 CoA ester lyase — —
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS21525 hypothetical protein 0.41 RR42_RS36610 host specificity protein low > 128
Serratia liquefaciens MT49 0.40 IAI46_05890 diguanylate cyclase 0.20 IAI46_16995 citrate (pro-3S)-lyase subunit beta low > 86
Pseudomonas simiae WCS417 0.39 PS417_21835 histidine kinase 0.37 PS417_14915 host specificity protein low > 88
Pseudomonas fluorescens SBW25-INTG 0.39 PFLU_RS23435 diguanylate cyclase 0.36 PFLU_RS16935 CoA ester lyase low > 109
Pseudomonas fluorescens SBW25 0.39 PFLU_RS23435 diguanylate cyclase 0.36 PFLU_RS16935 CoA ester lyase low > 109
Dickeya dadantii 3937 0.36 DDA3937_RS06830 diguanylate cyclase 0.18 DDA3937_RS07835 citrate (pro-3S)-lyase subunit beta — —
Pseudomonas fluorescens FW300-N2C3 0.35 AO356_01080 histidine kinase 0.35 AO356_28780 host specificity protein — —
Pseudomonas stutzeri RCH2 0.34 Psest_1455 diguanylate cyclase (GGDEF) domain 0.31 Psest_2665 Citrate lyase beta subunit — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.34 GFF4282 Protein YaiC 0.20 GFF3075 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) low > 78
Pectobacterium carotovorum WPP14 0.33 HER17_RS14460 diguanylate cyclase AdrA 0.32 HER17_RS01655 CoA ester lyase low > 75
Pseudomonas fluorescens FW300-N2E2 0.33 Pf6N2E2_139 Two-component response regulator 0.18 Pf6N2E2_1831 Citrate lyase beta chain (EC 4.1.3.6) low > 103
Escherichia coli ECRC101 0.31 MCAODC_27840 adrA diguanylate cyclase AdrA 0.18 MCAODC_26670 citE citrate (pro-3S)-lyase subunit beta low > 87
Escherichia fergusonii Becca 0.31 EFB2_03671 putative diguanylate cyclase DgcC 0.18 EFB2_03475 Citrate lyase subunit beta low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.31 OHPLBJKB_03289 putative diguanylate cyclase DgcC 0.18 OHPLBJKB_03089 Citrate lyase subunit beta low > 73
Escherichia coli ECRC99 0.31 KEDOAH_19350 adrA diguanylate cyclase AdrA 0.18 KEDOAH_20515 citE citrate (pro-3S)-lyase subunit beta — —
Escherichia coli ECRC100 0.31 OKFHMN_08615 adrA diguanylate cyclase AdrA 0.18 OKFHMN_07455 citE citrate (pro-3S)-lyase subunit beta low > 80
Escherichia coli ECOR38 0.31 HEPCGN_07255 adrA diguanylate cyclase AdrA 0.18 HEPCGN_00820 citE citrate (pro-3S)-lyase subunit beta low > 87
Escherichia coli ECRC102 0.31 NIAGMN_06670 adrA diguanylate cyclase AdrA 0.17 NIAGMN_05510 citE citrate lyase subunit beta — —
Escherichia coli BW25113 0.31 b0385 yaiC predicted diguanylate cyclase (NCBI) 0.18 b0616 citE citrate lyase beta chain (acyl lyase subunit) (VIMSS) low > 76
Escherichia coli ECOR27 0.31 NOLOHH_01540 adrA diguanylate cyclase AdrA 0.18 NOLOHH_23830 citE citrate lyase subunit beta low > 75
Escherichia coli ECRC98 0.31 JDDGAC_12270 adrA diguanylate cyclase AdrA 0.18 JDDGAC_11100 citE citrate (pro-3S)-lyase subunit beta low > 86
Escherichia coli BL21 0.31 ECD_00332 diguanylate cyclase, cellulose regualtor 0.18 ECD_00584 citrate lyase, citryl-ACP lyase (beta) subunit low > 61
Escherichia coli Nissle 1917 0.31 ECOLIN_RS02340 diguanylate cyclase AdrA 0.18 ECOLIN_RS03365 citrate (pro-3S)-lyase subunit beta — —
Pseudomonas fluorescens FW300-N1B4 0.31 Pf1N1B4_5860 Two-component response regulator 0.35 Pf1N1B4_5615 Citrate lyase beta chain (EC 4.1.3.6) — —
Escherichia coli ECRC62 0.31 BNILDI_22955 adrA diguanylate cyclase AdrA 0.18 BNILDI_21840 citE citrate (pro-3S)-lyase subunit beta low > 75
Pseudomonas syringae pv. syringae B728a ΔmexB 0.30 Psyr_3763 GGDEF domain protein 0.37 Psyr_2171 HpcH/HpaI aldolase low > 86
Pseudomonas syringae pv. syringae B728a 0.30 Psyr_3763 GGDEF domain protein 0.37 Psyr_2171 HpcH/HpaI aldolase low > 86
Dyella japonica UNC79MFTsu3.2 0.30 ABZR86_RS19325 diguanylate cyclase 0.19 ABZR86_RS14500 CoA ester lyase low > 74
Enterobacter sp. TBS_079 0.28 MPMX20_00975 putative diguanylate cyclase DgcC 0.19 MPMX20_03825 Citrate lyase subunit beta low > 85
Enterobacter asburiae PDN3 0.26 EX28DRAFT_2586 diguanylate cyclase (GGDEF) domain 0.18 EX28DRAFT_3005 citrate lyase, beta subunit low > 76
Klebsiella michiganensis M5al 0.25 BWI76_RS21800 MASE2 domain/diguanylate cyclase 0.19 BWI76_RS04445 citrate (pro-3S)-lyase subunit beta low > 92
Rahnella sp. WP5 0.23 EX31_RS22990 diguanylate cyclase 0.19 EX31_RS17795 citrate (pro-3S)-lyase subunit beta low > 89

Not shown: 5 genomes with orthologs for HSERO_RS16875 only; 29 genomes with orthologs for HSERO_RS14045 only