Conservation of cofitness between HER17_RS04235 and HER17_RS20690 in Pectobacterium carotovorum WPP14

34 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS04235 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 1.0 HER17_RS20690 HTH-type transcriptional regulator MetR 0.97 3
Dickeya dadantii 3937 0.80 DDA3937_RS16945 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.91 DDA3937_RS20385 HTH-type transcriptional regulator MetR 0.82 39
Dickeya dianthicola 67-19 0.79 HGI48_RS17015 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.91 HGI48_RS00815 HTH-type transcriptional regulator MetR 0.92 3
Dickeya dianthicola ME23 0.79 DZA65_RS18090 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.91 DZA65_RS00870 HTH-type transcriptional regulator MetR 0.81 9
Serratia liquefaciens MT49 0.78 IAI46_03685 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.88 IAI46_01030 HTH-type transcriptional regulator MetR low > 86
Pantoea sp. MT58 0.78 IAI47_04150 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.85 IAI47_18315 HTH-type transcriptional regulator MetR 0.84 39
Rahnella sp. WP5 0.77 EX31_RS07905 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.92 EX31_RS25370 HTH-type transcriptional regulator MetR low > 89
Enterobacter asburiae PDN3 0.77 EX28DRAFT_2853 sulfite reductase [NADPH] flavoprotein, alpha-component 0.85 EX28DRAFT_4493 Transcriptional regulator 0.77 31
Escherichia coli ECRC62 0.75 BNILDI_10735 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.88 BNILDI_05070 metR HTH-type transcriptional regulator MetR 0.98 4
Escherichia coli ECOR27 0.75 NOLOHH_12185 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.88 NOLOHH_06460 metR HTH-type transcriptional regulator MetR 0.92 35
Escherichia coli BW25113 0.75 b2764 cysJ sulfite reductase, alpha subunit, flavoprotein (NCBI) 0.88 b3828 metR DNA-binding transcriptional activator, homocysteine-binding (NCBI) low > 76
Enterobacter sp. TBS_079 0.75 MPMX20_03643 Sulfite reductase [NADPH] flavoprotein alpha-component 0.87 MPMX20_04452 HTH-type transcriptional regulator MetR 0.75 6
Escherichia coli BL21 0.75 ECD_02609 sulfite reductase, alpha subunit, flavoprotein 0.88 ECD_03707 methionine biosynthesis regulon transcriptional regulator 0.84 4
Escherichia coli HS(pFamp)R (ATCC 700891) 0.75 OHPLBJKB_00969 Sulfite reductase [NADPH] flavoprotein alpha-component 0.88 OHPLBJKB_04223 HTH-type transcriptional regulator MetR low > 73
Escherichia coli Nissle 1917 0.75 ECOLIN_RS15410 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.88 ECOLIN_RS30005 HTH-type transcriptional regulator MetR — —
Escherichia fergusonii Becca 0.75 EFB2_01153 Sulfite reductase [NADPH] flavoprotein alpha-component 0.88 EFB2_04809 HTH-type transcriptional regulator MetR low > 86
Escherichia coli ECOR38 0.75 HEPCGN_19095 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.88 HEPCGN_13030 metR HTH-type transcriptional regulator MetR 0.95 30
Klebsiella michiganensis M5al 0.74 BWI76_RS22765 sulfite reductase subunit alpha 0.81 BWI76_RS01275 LysR family transcriptional regulator low > 92
Escherichia coli ECRC100 0.74 OKFHMN_20370 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.88 OKFHMN_14330 metR HTH-type transcriptional regulator MetR 1.00 1
Escherichia coli ECRC102 0.74 NIAGMN_18140 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.88 NIAGMN_12085 metR HTH-type transcriptional regulator MetR — —
Escherichia coli ECRC99 0.74 KEDOAH_07755 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.88 KEDOAH_13820 metR HTH-type transcriptional regulator MetR — —
Escherichia coli ECRC98 0.74 JDDGAC_24035 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.88 JDDGAC_17955 metR HTH-type transcriptional regulator MetR 0.70 62
Escherichia coli ECRC101 0.74 MCAODC_10895 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.88 MCAODC_04835 metR HTH-type transcriptional regulator MetR 0.66 64
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.74 GFF4820 Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2) 0.85 GFF253 Transcriptional activator MetR low > 78
Erwinia tracheiphila SCR3 0.73 LU632_RS06400 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.83 LU632_RS24035 metR HTH-type transcriptional regulator MetR 0.88 17
Vibrio cholerae E7946 ATCC 55056 0.53 CSW01_02010 assimilatory sulfite reductase (NADPH) flavoprotein subunit 0.57 CSW01_08580 HTH-type transcriptional regulator MetR low > 62
Shewanella amazonensis SB2B 0.49 Sama_2839 sulfite reductase subunit alpha (RefSeq) 0.37 Sama_2628 transcriptional activator protein MetR (RefSeq) 0.97 12
Shewanella oneidensis MR-1 0.49 SO3738 cysJ sulfite reductase (NADPH) flavoprotein alpha-component (NCBI ptt file) 0.38 SO0817 metR transcriptional activator protein MetR (NCBI ptt file) 0.93 24
Shewanella loihica PV-4 0.49 Shew_0665 sulfite reductase (NADPH) flavoprotein, alpha chain (RefSeq) 0.35 Shew_2987 LysR family transcriptional regulator (RefSeq) low > 60
Shewanella sp. ANA-3 0.48 Shewana3_0855 sulfite reductase (NADPH) alpha subunit (RefSeq) 0.38 Shewana3_3470 LysR family transcriptional regulator (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.47 MIT1002_03380 Sulfite reductase [NADPH] flavoprotein alpha-component 0.29 MIT1002_01119 HTH-type transcriptional regulator GltC — —
Castellaniella sp019104865 MT123 0.39 ABCV34_RS00220 assimilatory sulfite reductase (NADPH) flavoprotein subunit 0.37 ABCV34_RS04450 LysR substrate-binding domain-containing protein low > 48
Xanthomonas campestris pv. campestris strain 8004 0.35 Xcc-8004.1258.1 Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2) 0.31 Xcc-8004.400.1 Transcriptional activator MetR 0.92 5
Agrobacterium fabrum C58 0.32 Atu0146 sulfite reductase (NADPH) flavoprotein alpha-component 0.30 Atu3827 LysR family transcriptional regulator low > 89
Pseudomonas stutzeri RCH2 0.13 Psest_3345 Sulfite reductase, alpha subunit (flavoprotein) 0.42 Psest_1450 Transcriptional regulator — —

Not shown: 8 genomes with orthologs for HER17_RS04235 only; 32 genomes with orthologs for HER17_RS20690 only