Conservation of cofitness between HER17_RS08615 and HER17_RS16595 in Pectobacterium carotovorum WPP14

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS08615 23S rRNA pseudouridine(955/2504/2580) synthase RluC 1.0 HER17_RS16595 TerC family protein 0.78 19
Dickeya dianthicola ME23 0.84 DZA65_RS13690 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.84 DZA65_RS05280 TerC family protein low > 75
Dickeya dianthicola 67-19 0.84 HGI48_RS13220 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.84 HGI48_RS04945 TerC family protein low > 71
Dickeya dadantii 3937 0.84 DDA3937_RS13155 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.85 DDA3937_RS04935 TerC family protein low > 74
Serratia liquefaciens MT49 0.83 IAI46_09755 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.81 IAI46_20465 TerC family protein low > 86
Klebsiella michiganensis M5al 0.83 BWI76_RS11050 23S rRNA pseudouridine(955/2504/2580) synthase 0.77 BWI76_RS23295 tellurium resistance protein TerC low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.83 GFF3366 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.76 GFF1315 FIG003462: membrane protein low > 78
Pantoea sp. MT58 0.82 IAI47_12105 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.80 IAI47_03905 TerC family protein low > 76
Escherichia coli ECRC100 0.82 OKFHMN_03615 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.75 OKFHMN_19985 ygdQ UPF0053 inner membrane protein YgdQ low > 80
Escherichia fergusonii Becca 0.82 EFB2_02889 Ribosomal large subunit pseudouridine synthase C 0.75 EFB2_01051 hypothetical protein low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.82 OHPLBJKB_02580 Ribosomal large subunit pseudouridine synthase C 0.75 OHPLBJKB_00897 hypothetical protein low > 73
Escherichia coli BW25113 0.82 b1086 rluC 23S rRNA pseudouridylate synthase (NCBI) 0.75 b2832 ygdQ predicted inner membrane protein (NCBI) low > 76
Escherichia coli ECRC102 0.82 NIAGMN_24215 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.75 NIAGMN_17755 ygdQ UPF0053 inner membrane protein YgdQ — —
Escherichia coli ECOR38 0.82 HEPCGN_23865 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.75 HEPCGN_19240 ygdQ UPF0053 inner membrane protein YgdQ low > 87
Escherichia coli ECOR27 0.82 NOLOHH_21145 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.75 NOLOHH_11870 ygdQ UPF0053 inner membrane protein YgdQ low > 75
Escherichia coli ECRC62 0.82 BNILDI_19305 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.75 BNILDI_10350 ygdQ UPF0053 inner membrane protein YgdQ low > 75
Escherichia coli ECRC99 0.82 KEDOAH_24140 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.75 KEDOAH_08145 ygdQ UPF0053 inner membrane protein YgdQ — —
Escherichia coli ECRC101 0.82 MCAODC_22975 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.75 MCAODC_10510 ygdQ UPF0053 inner membrane protein YgdQ low > 87
Escherichia coli ECRC98 0.82 JDDGAC_07275 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.75 JDDGAC_23650 ygdQ UPF0053 inner membrane protein YgdQ low > 86
Escherichia coli BL21 0.82 ECD_01082 23S rRNA pseudouridine(955,2504,2580) synthase 0.75 ECD_02680 UPF0053 family inner membrane protein low > 61
Escherichia coli Nissle 1917 0.81 ECOLIN_RS06280 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.75 ECOLIN_RS15900 TerC family protein low > 55
Erwinia tracheiphila SCR3 0.79 LU632_RS14855 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.77 LU632_RS06090 TerC family protein low > 74
Pseudomonas fluorescens FW300-N2E2 0.57 Pf6N2E2_5944 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.53 Pf6N2E2_4139 Integral membrane protein TerC low > 103
Pseudomonas sp. RS175 0.56 PFR28_03018 Ribosomal large subunit pseudouridine synthase C 0.52 PFR28_04647 hypothetical protein 0.26 48
Pseudomonas syringae pv. syringae B728a 0.56 Psyr_1639 ribosomal large subunit pseudouridine synthase C 0.51 Psyr_2424 Integral membrane protein TerC low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.56 Psyr_1639 ribosomal large subunit pseudouridine synthase C 0.51 Psyr_2424 Integral membrane protein TerC low > 86
Pseudomonas fluorescens FW300-N2C3 0.56 AO356_20125 23S rRNA pseudouridylate synthase 0.49 AO356_01795 hypothetical protein low > 104
Pseudomonas sp. S08-1 0.56 OH686_22095 LSU rRNA pseudouridine(955/2504/2580) synthase 0.52 OH686_12060 UPF0053 inner membrane protein YgdQ low > 80
Pseudomonas putida KT2440 0.55 PP_1906 ribosomal large subunit pseudouridine synthase C 0.53 PP_2445 conserved membrane protein of unknown function low > 96
Pseudomonas fluorescens FW300-N2E3 0.54 AO353_01405 23S rRNA pseudouridylate synthase 0.52 AO353_20125 hypothetical protein low > 101
Pseudomonas fluorescens FW300-N1B4 0.53 Pf1N1B4_459 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.49 Pf1N1B4_3938 Integral membrane protein TerC — —
Pseudomonas fluorescens GW456-L13 0.53 PfGW456L13_2097 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.52 PfGW456L13_634 Integral membrane protein TerC low > 87
Paraburkholderia sabiae LMG 24235 0.47 QEN71_RS04500 RluA family pseudouridine synthase 0.51 QEN71_RS09110 TerC family protein low > 153
Paraburkholderia graminis OAS925 0.46 ABIE53_003058 23S rRNA pseudouridine955/2504/2580 synthase 0.46 ABIE53_002234 putative tellurium resistance membrane protein TerC low > 113
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS14480 ribosomal large subunit pseudouridine synthase C 0.48 BPHYT_RS22290 membrane protein low > 109
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_04340 23S rRNA pseudouridine955/2504/2580 synthase 0.46 H281DRAFT_01085 Membrane protein TerC, possibly involved in tellurium resistance low > 103
Variovorax sp. OAS795 0.44 ABID97_RS08250 RluA family pseudouridine synthase 0.50 ABID97_RS29210 TerC family protein low > 91
Azospirillum sp. SherDot2 0.24 MPMX19_01718 Ribosomal large subunit pseudouridine synthase C 0.50 MPMX19_02317 hypothetical protein low > 112
Brevundimonas sp. GW460-12-10-14-LB2 0.24 A4249_RS07865 RluA family pseudouridine synthase 0.50 A4249_RS12740 TerC family protein low > 48
Azospirillum brasilense Sp245 0.24 AZOBR_RS06905 pseudouridine synthase 0.51 AZOBR_RS00970 membrane protein low > 97
Caulobacter crescentus NA1000 Δfur 0.23 CCNA_02059 ribosomal large subunit pseudouridine synthase C 0.46 CCNA_00352 integral membrane protein low > 67
Caulobacter crescentus NA1000 0.23 CCNA_02059 ribosomal large subunit pseudouridine synthase C 0.46 CCNA_00352 integral membrane protein low > 66

Not shown: 41 genomes with orthologs for HER17_RS08615 only; 2 genomes with orthologs for HER17_RS16595 only