Conservation of cofitness between HER17_RS05585 and HER17_RS15615 in Pectobacterium carotovorum WPP14

40 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS05585 DNA/RNA nuclease SfsA 1.0 HER17_RS15615 NfeD family protein 0.60 17
Serratia liquefaciens MT49 0.75 IAI46_21205 DNA/RNA nuclease SfsA 0.57 IAI46_05320 NfeD family protein low > 86
Dickeya dianthicola 67-19 0.72 HGI48_RS16045 DNA/RNA nuclease SfsA 0.66 HGI48_RS05900 NfeD family protein low > 71
Dickeya dianthicola ME23 0.72 DZA65_RS17130 DNA/RNA nuclease SfsA 0.66 DZA65_RS06235 NfeD family protein low > 75
Dickeya dadantii 3937 0.72 DDA3937_RS15930 DNA/RNA nuclease SfsA 0.65 DDA3937_RS05855 NfeD family protein low > 74
Rahnella sp. WP5 0.71 EX31_RS03245 DNA/RNA nuclease SfsA 0.46 EX31_RS22585 NfeD family protein low > 89
Pantoea sp. MT58 0.67 IAI47_15630 DNA/RNA nuclease SfsA 0.49 IAI47_14390 NfeD family protein low > 76
Erwinia tracheiphila SCR3 0.67 LU632_RS20075 sfsA DNA/RNA nuclease SfsA 0.46 LU632_RS15285 NfeD family protein low > 74
Enterobacter sp. TBS_079 0.67 MPMX20_00832 Sugar fermentation stimulation protein A 0.50 MPMX20_01086 Inner membrane protein YbbJ low > 85
Escherichia coli ECRC99 0.66 KEDOAH_17815 sfsA DNA/RNA nuclease SfsA 0.52 KEDOAH_19965 ybbJ Inner membrane protein YbbJ — —
Escherichia coli ECRC101 0.66 MCAODC_00855 sfsA DNA/RNA nuclease SfsA 0.52 MCAODC_27220 ybbJ Inner membrane protein YbbJ low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.66 OHPLBJKB_03516 Sugar fermentation stimulation protein A 0.53 OHPLBJKB_03186 Inner membrane protein YbbJ low > 73
Escherichia coli ECRC98 0.66 JDDGAC_13935 sfsA DNA/RNA nuclease SfsA 0.52 JDDGAC_11650 ybbJ Inner membrane protein YbbJ low > 86
Escherichia coli ECOR38 0.66 HEPCGN_08290 sfsA DNA/RNA nuclease SfsA 0.51 HEPCGN_06640 ybbJ Inner membrane protein YbbJ low > 87
Escherichia coli BL21 0.66 ECD_00145 sugar fermentation stimulation protein A 0.53 ECD_00439 inner membrane protein; stimulator of the QmcA suppressor of ftsH-htpX low > 61
Escherichia coli Nissle 1917 0.66 ECOLIN_RS00820 DNA/RNA nuclease SfsA 0.52 ECOLIN_RS02890 NfeD family protein — —
Escherichia coli ECRC100 0.66 OKFHMN_10340 sfsA DNA/RNA nuclease SfsA 0.52 OKFHMN_08005 ybbJ Inner membrane protein YbbJ — —
Escherichia coli ECRC62 0.66 BNILDI_08985 sfsA DNA/RNA nuclease SfsA 0.53 BNILDI_22415 ybbJ Inner membrane protein YbbJ low > 75
Escherichia coli ECOR27 0.66 NOLOHH_02685 sfsA DNA/RNA nuclease SfsA 0.53 NOLOHH_00995 ybbJ Inner membrane protein YbbJ low > 75
Escherichia coli BW25113 0.66 b0146 sfsA sugar fermentation stimulation protein A (NCBI) 0.53 b0488 ybbJ conserved inner membrane protein (RefSeq) low > 76
Escherichia coli ECRC102 0.66 NIAGMN_08190 sfsA DNA/RNA nuclease SfsA 0.52 NIAGMN_06055 ybbJ Inner membrane protein YbbJ — —
Enterobacter asburiae PDN3 0.65 EX28DRAFT_3735 sugar fermentation stimulation protein 0.50 EX28DRAFT_2472 Membrane protein implicated in regulation of membrane protease activity low > 76
Escherichia fergusonii Becca 0.65 EFB2_03898 Sugar fermentation stimulation protein A 0.51 EFB2_03567 Inner membrane protein YbbJ low > 86
Klebsiella michiganensis M5al 0.65 BWI76_RS05020 sugar fermentation stimulation protein SfsA 0.48 BWI76_RS06915 membrane protein low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.64 GFF86 Sugar/maltose fermentation stimulation protein homolog 0.44 GFF4406 Putative activity regulator of membrane protease YbbK low > 78
Vibrio cholerae E7946 ATCC 55056 0.62 CSW01_03160 DNA/RNA nuclease SfsA 0.34 CSW01_04980 NfeD family protein low > 62
Kangiella aquimarina DSM 16071 0.50 B158DRAFT_0055 sugar fermentation stimulation protein 0.33 B158DRAFT_0708 Membrane protein implicated in regulation of membrane protease activity low > 40
Pseudomonas fluorescens FW300-N2E2 0.44 Pf6N2E2_5162 Sugar/maltose fermentation stimulation protein homolog 0.35 Pf6N2E2_4489 Putative activity regulator of membrane protease YbbK low > 103
Pseudomonas fluorescens FW300-N2C3 0.44 AO356_16105 XRE family transcriptional regulator 0.35 AO356_13050 hypothetical protein low > 104
Pseudomonas fluorescens SBW25 0.43 PFLU_RS25705 DNA/RNA nuclease SfsA 0.33 PFLU_RS28890 NfeD family protein low > 109
Pseudomonas sp. S08-1 0.43 OH686_17290 sugar fermentation stimulation protein 0.36 OH686_11150 Putative activity regulator of membrane protease YbbK low > 80
Pseudomonas fluorescens SBW25-INTG 0.43 PFLU_RS25705 DNA/RNA nuclease SfsA 0.33 PFLU_RS28890 NfeD family protein low > 109
Pseudomonas fluorescens FW300-N1B4 0.43 Pf1N1B4_2864 Sugar/maltose fermentation stimulation protein homolog 0.21 Pf1N1B4_5312 Putative activity regulator of membrane protease YbbK low > 87
Pseudomonas fluorescens GW456-L13 0.43 PfGW456L13_1530 Sugar/maltose fermentation stimulation protein homolog 0.34 PfGW456L13_906 Putative activity regulator of membrane protease YbbK low > 87
Pseudomonas simiae WCS417 0.41 PS417_23865 XRE family transcriptional regulator 0.33 PS417_27230 membrane protein implicated in regulation of membrane protease activity low > 88
Azospirillum brasilense Sp245 0.35 AZOBR_RS04410 XRE family transcriptional regulator 0.23 AZOBR_RS12585 membrane protein low > 97
Agrobacterium fabrum C58 0.34 Atu1605 sugar fermentation stimulation protein 0.31 Atu3773 hypothetical protein low > 89
Azospirillum sp. SherDot2 0.33 MPMX19_00188 Sugar fermentation stimulation protein A 0.21 MPMX19_00926 Inner membrane protein YbbJ — —
Caulobacter crescentus NA1000 Δfur 0.31 CCNA_02757 sugar fermentation stimulation protein A 0.20 CCNA_03484 NfeD-related membrane protease regulator low > 67
Caulobacter crescentus NA1000 0.31 CCNA_02757 sugar fermentation stimulation protein A 0.20 CCNA_03484 NfeD-related membrane protease regulator low > 66
Sinorhizobium meliloti 1021 0.29 SMc00297 sugar fermentation stimulation protein A 0.21 SMc04021 hypothetical protein — —

Not shown: 19 genomes with orthologs for HER17_RS05585 only; 11 genomes with orthologs for HER17_RS15615 only