Conservation of cofitness between HER17_RS00665 and HER17_RS11785 in Pectobacterium carotovorum WPP14

36 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS00665 envelope stress response regulator transcription factor CpxR 1.0 HER17_RS11785 MurR/RpiR family transcriptional regulator 0.77 20
Pantoea sp. MT58 0.92 IAI47_00760 envelope stress response regulator transcription factor CpxR 0.67 IAI47_08490 MurR/RpiR family transcriptional regulator low > 76
Erwinia tracheiphila SCR3 0.92 LU632_RS21855 cpxR envelope stress response regulator transcription factor CpxR 0.71 LU632_RS13365 MurR/RpiR family transcriptional regulator low > 74
Rahnella sp. WP5 0.90 EX31_RS14320 envelope stress response regulator transcription factor CpxR 0.88 EX31_RS10635 MurR/RpiR family transcriptional regulator low > 89
Dickeya dadantii 3937 0.89 DDA3937_RS00780 envelope stress response regulator transcription factor CpxR 0.92 DDA3937_RS10130 MurR/RpiR family transcriptional regulator — —
Dickeya dianthicola 67-19 0.88 HGI48_RS20595 envelope stress response regulator transcription factor CpxR 0.91 HGI48_RS10160 MurR/RpiR family transcriptional regulator low > 71
Dickeya dianthicola ME23 0.88 DZA65_RS21610 envelope stress response regulator transcription factor CpxR 0.91 DZA65_RS10575 MurR/RpiR family transcriptional regulator low > 75
Enterobacter sp. TBS_079 0.86 MPMX20_04556 Transcriptional regulatory protein CpxR 0.82 MPMX20_02758 HTH-type transcriptional regulator HexR low > 85
Enterobacter asburiae PDN3 0.86 EX28DRAFT_4387 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 0.83 EX28DRAFT_0703 transcriptional regulator, RpiR family low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.86 GFF2280 Copper-sensing two-component system response regulator CpxR 0.82 GFF1632 Phosphogluconate repressor HexR, RpiR family low > 78
Escherichia coli ECOR38 0.85 HEPCGN_12490 cpxR envelope stress response regulator transcription factor CpxR 0.83 HEPCGN_04730 hexR DNA-binding transcriptional regulator HexR low > 87
Escherichia coli Nissle 1917 0.85 ECOLIN_RS22540 envelope stress response regulator transcription factor CpxR 0.83 ECOLIN_RS10325 DNA-binding transcriptional regulator HexR — —
Escherichia coli ECRC102 0.85 NIAGMN_11600 cpxR envelope stress response regulator transcription factor CpxR 0.83 NIAGMN_01735 hexR DNA-binding transcriptional regulator HexR — —
Klebsiella michiganensis M5al 0.85 BWI76_RS00720 DNA-binding response regulator 0.82 BWI76_RS18110 transcriptional regulator HexR low > 92
Escherichia coli ECRC100 0.85 OKFHMN_13845 cpxR envelope stress response regulator transcription factor CpxR 0.83 OKFHMN_26325 hexR DNA-binding transcriptional regulator HexR low > 80
Escherichia coli ECRC62 0.85 BNILDI_05545 cpxR envelope stress response regulator transcription factor CpxR 0.83 BNILDI_15635 hexR DNA-binding transcriptional regulator HexR low > 75
Escherichia coli ECRC98 0.85 JDDGAC_17470 cpxR envelope stress response regulator transcription factor CpxR 0.83 JDDGAC_00900 hexR DNA-binding transcriptional regulator HexR low > 86
Escherichia coli BW25113 0.85 b3912 cpxR DNA-binding response regulator in two-component regulatory system with CpxA (NCBI) 0.83 b1853 yebK predicted DNA-binding transcriptional regulator (NCBI) low > 76
Escherichia coli ECOR27 0.85 NOLOHH_05980 cpxR envelope stress response regulator transcription factor CpxR 0.83 NOLOHH_16840 hexR DNA-binding transcriptional regulator HexR low > 75
Escherichia coli ECRC99 0.85 KEDOAH_14310 cpxR envelope stress response regulator transcription factor CpxR 0.83 KEDOAH_01780 hexR DNA-binding transcriptional regulator HexR — —
Escherichia coli ECRC101 0.85 MCAODC_04345 cpxR envelope stress response regulator transcription factor CpxR 0.83 MCAODC_19080 hexR DNA-binding transcriptional regulator HexR low > 87
Escherichia coli BL21 0.85 ECD_03798 response regulator in two-component regulatory system with CpxA 0.83 ECD_01824 putative DNA-binding transcriptional regulator low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.85 OHPLBJKB_04138 Transcriptional regulatory protein CpxR 0.83 OHPLBJKB_01875 HTH-type transcriptional regulator HexR low > 73
Escherichia fergusonii Becca 0.85 EFB2_04705 Transcriptional regulatory protein CpxR 0.83 EFB2_02089 HTH-type transcriptional regulator HexR low > 86
Serratia liquefaciens MT49 0.84 IAI46_24660 envelope stress response regulator transcription factor CpxR 0.89 IAI46_14580 MurR/RpiR family transcriptional regulator low > 86
Vibrio cholerae E7946 ATCC 55056 0.56 CSW01_13590 DNA-binding response regulator 0.77 CSW01_05825 transcriptional regulator HexR low > 62
Shewanella loihica PV-4 0.54 Shew_3570 two component transcriptional regulator (RefSeq) 0.77 Shew_2049 DNA-binding transcriptional regulator HexR (RefSeq) low > 60
Shewanella amazonensis SB2B 0.52 Sama_3432 response regulator receiver protein (RefSeq) 0.77 Sama_1813 DNA-binding transcriptional regulator HexR (RefSeq) low > 62
Shewanella oneidensis MR-1 0.50 SO4477 cpxR transcriptional regulatory protein CpxR (NCBI ptt file) 0.77 SO2490 transcriptional regulator, RpiR family (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.50 Shewana3_0253 two component transcriptional regulator (RefSeq) 0.77 Shewana3_2152 DNA-binding transcriptional regulator HexR (RefSeq) low > 73
Dyella japonica UNC79MFTsu3.2 0.48 ABZR86_RS07815 response regulator 0.11 ABZR86_RS12100 MurR/RpiR family transcriptional regulator low > 74
Alteromonas macleodii MIT1002 0.47 MIT1002_00477 Response regulator ArlR 0.75 MIT1002_02408 putative HTH-type transcriptional regulator YbbH — —
Pseudomonas stutzeri RCH2 0.40 Psest_1884 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 0.55 Psest_0851 Transcriptional regulators low > 67
Pseudomonas fluorescens FW300-N1B4 0.39 Pf1N1B4_3547 DNA-binding response regulator 0.55 Pf1N1B4_590 Phosphogluconate repressor HexR, RpiR family low > 87
Pseudomonas sp. S08-1 0.39 OH686_20775 Two-component transcriptional response regulator, LuxR family 0.55 OH686_02440 Phosphogluconate repressor HexR, RpiR family low > 80
Pseudomonas fluorescens GW456-L13 0.39 PfGW456L13_4409 DNA-binding response regulator 0.55 PfGW456L13_1900 Phosphogluconate repressor HexR, RpiR family low > 87
Pseudomonas sp. RS175 0.39 PFR28_03323 Transcriptional regulatory protein CpxR 0.55 PFR28_00572 HTH-type transcriptional regulator HexR low > 88

Not shown: 2 genomes with orthologs for HER17_RS00665 only; 35 genomes with orthologs for HER17_RS11785 only