Conservation of cofitness between HER17_RS13490 and HER17_RS03550 in Pectobacterium carotovorum WPP14

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS13490 NAD-dependent malic enzyme 1.0 HER17_RS03550 excinuclease ABC subunit UvrA 0.69 6
Dickeya dianthicola 67-19 0.89 HGI48_RS08645 NAD-dependent malic enzyme 0.93 HGI48_RS17610 excinuclease ABC subunit UvrA low > 71
Dickeya dianthicola ME23 0.89 DZA65_RS08935 NAD-dependent malic enzyme 0.93 DZA65_RS18735 excinuclease ABC subunit UvrA low > 75
Dickeya dadantii 3937 0.89 DDA3937_RS08480 NAD-dependent malic enzyme 0.93 DDA3937_RS17605 excinuclease ABC subunit UvrA low > 74
Serratia liquefaciens MT49 0.88 IAI46_07935 NAD-dependent malic enzyme 0.92 IAI46_22905 excinuclease ABC subunit UvrA low > 86
Rahnella sp. WP5 0.86 EX31_RS18665 NAD-dependent malic enzyme 0.91 EX31_RS11990 excinuclease ABC subunit UvrA low > 89
Pantoea sp. MT58 0.82 IAI47_06755 NAD-dependent malic enzyme 0.90 IAI47_17815 excinuclease ABC subunit UvrA low > 76
Erwinia tracheiphila SCR3 0.78 LU632_RS08550 NAD-dependent malic enzyme 0.90 LU632_RS23685 uvrA excinuclease ABC subunit UvrA low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.77 GFF2556 NAD-dependent malic enzyme (EC 1.1.1.38) 0.91 GFF1429 Excinuclease ABC subunit A low > 78
Escherichia coli HS(pFamp)R (ATCC 700891) 0.77 OHPLBJKB_02238 NAD-dependent malic enzyme 0.91 OHPLBJKB_03983 UvrABC system protein A low > 73
Escherichia coli ECRC62 0.77 BNILDI_17520 maeA malate dehydrogenase 0.91 BNILDI_06380 uvrA excinuclease ABC subunit UvrA low > 75
Escherichia coli BW25113 0.77 b1479 sfcA NAD-linked malate dehydrogenase (malic enzyme) (VIMSS) 0.91 b4058 uvrA excinuclease ABC subunit A (NCBI) low > 76
Escherichia coli BL21 0.77 ECD_01437 malate dehydrogenase, decarboxylating, NAD-requiring; malic enzyme 0.91 ECD_03930 ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC — —
Escherichia coli ECOR27 0.77 NOLOHH_19035 maeA malate dehydrogenase 0.91 NOLOHH_05145 uvrA excinuclease ABC subunit UvrA low > 75
Escherichia fergusonii Becca 0.77 EFB2_02512 NAD-dependent malic enzyme 0.91 EFB2_04533 UvrABC system protein A low > 86
Enterobacter sp. TBS_079 0.77 MPMX20_02369 NAD-dependent malic enzyme 0.91 MPMX20_00276 UvrABC system protein A low > 85
Enterobacter asburiae PDN3 0.77 EX28DRAFT_1103 Malic enzyme 0.91 EX28DRAFT_4246 excinuclease ABC, A subunit low > 76
Escherichia coli ECOR38 0.77 HEPCGN_26435 maeA malate dehydrogenase 0.91 HEPCGN_11510 uvrA excinuclease ABC subunit UvrA low > 87
Klebsiella michiganensis M5al 0.77 BWI76_RS13830 NAD-dependent malic enzyme 0.91 BWI76_RS01950 excinuclease ABC subunit A low > 92
Escherichia coli Nissle 1917 0.77 ECOLIN_RS08525 malate dehydrogenase 0.91 ECOLIN_RS23485 excinuclease ABC subunit UvrA — —
Escherichia coli ECRC99 0.77 KEDOAH_27080 maeA malate dehydrogenase 0.91 KEDOAH_15255 uvrA excinuclease ABC subunit UvrA — —
Escherichia coli ECRC100 0.77 OKFHMN_01360 maeA malate dehydrogenase 0.91 OKFHMN_12895 uvrA excinuclease ABC subunit UvrA low > 80
Escherichia coli ECRC102 0.77 NIAGMN_25490 maeA malate dehydrogenase 0.91 NIAGMN_10740 uvrA excinuclease ABC subunit UvrA — —
Escherichia coli ECRC101 0.77 MCAODC_16580 maeA malate dehydrogenase 0.91 MCAODC_03405 uvrA excinuclease ABC subunit UvrA low > 87
Escherichia coli ECRC98 0.77 JDDGAC_03850 maeA malate dehydrogenase 0.91 JDDGAC_16530 uvrA excinuclease ABC subunit UvrA low > 86
Acinetobacter radioresistens SK82 0.72 MPMX26_00080 NAD-dependent malic enzyme 0.68 MPMX26_02892 UvrABC system protein A low > 36
Vibrio cholerae E7946 ATCC 55056 0.71 CSW01_06015 NAD-dependent malic enzyme 0.82 CSW01_02080 UvrABC system protein A low > 62
Shewanella sp. ANA-3 0.69 Shewana3_0750 malate dehydrogenase (RefSeq) 0.81 Shewana3_3592 excinuclease ABC subunit A (RefSeq) low > 73
Shewanella oneidensis MR-1 0.69 SO3855 sfcA malate oxidoreductase (NCBI ptt file) 0.80 SO4030 uvrA excinuclease ABC, A subunit (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.69 Sama_2621 malate dehydrogenase (RefSeq) 0.80 Sama_0514 excinuclease ABC, A subunit (RefSeq) low > 62
Shewanella loihica PV-4 0.68 Shew_2962 malate dehydrogenase (RefSeq) 0.81 Shew_0533 excinuclease ABC, A subunit (RefSeq) low > 60
Pseudomonas syringae pv. syringae B728a ΔmexB 0.66 Psyr_1561 NAD-dependent malic enzyme 0.77 Psyr_4520 Excinuclease ABC subunit A low > 86
Pseudomonas syringae pv. syringae B728a 0.66 Psyr_1561 NAD-dependent malic enzyme 0.77 Psyr_4520 Excinuclease ABC subunit A low > 86
Alteromonas macleodii MIT1002 0.64 MIT1002_00455 NAD-dependent malic enzyme 0.79 MIT1002_00179 Excinuclease ABC subunit A low > 70
Mycobacterium tuberculosis H37Rv 0.37 Rv2332 Probable [NAD] dependent malate oxidoreductase Mez (malic enzyme) (NAD-malic enzyme) (malate dehydrogenase (oxaloacetate decarboxylating)) (pyruvic-malic carboxylase) (NAD-me) 0.55 Rv1638 Probable excinuclease ABC (subunit A-DNA-binding ATPase) UvrA low > 58
Fusobacterium nucleatum SB010 0.36 HUW76_04125 NAD-dependent malic enzyme 0.55 HUW76_06660 excinuclease ABC subunit UvrA low > 35
Ralstonia solanacearum PSI07 0.35 RPSI07_RS13995 NAD-dependent malic enzyme 0.68 RPSI07_RS22065 excinuclease ABC subunit UvrA low > 81
Paraburkholderia bryophila 376MFSha3.1 0.34 H281DRAFT_00026 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) 0.68 H281DRAFT_01913 Excinuclease ABC subunit A low > 103

Not shown: 0 genomes with orthologs for HER17_RS13490 only; 65 genomes with orthologs for HER17_RS03550 only