Conservation of cofitness between HER17_RS18005 and HER17_RS03255 in Pectobacterium carotovorum WPP14

34 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS18005 glycine cleavage system aminomethyltransferase GcvT 1.0 HER17_RS03255 nucleoside-specific channel-forming protein Tsx 0.60 7
Dickeya dadantii 3937 0.82 DDA3937_RS03245 glycine cleavage system aminomethyltransferase GcvT 0.76 DDA3937_RS17950 nucleoside-specific channel-forming protein Tsx low > 74
Dickeya dianthicola 67-19 0.82 HGI48_RS03390 glycine cleavage system aminomethyltransferase GcvT 0.76 HGI48_RS17885 nucleoside-specific channel-forming protein Tsx low > 71
Dickeya dianthicola ME23 0.81 DZA65_RS03435 glycine cleavage system aminomethyltransferase GcvT 0.76 DZA65_RS19030 nucleoside-specific channel-forming protein Tsx low > 75
Rahnella sp. WP5 0.81 EX31_RS21510 glycine cleavage system aminomethyltransferase GcvT 0.72 EX31_RS18780 nucleoside-specific channel-forming protein Tsx low > 89
Serratia liquefaciens MT49 0.81 IAI46_20860 glycine cleavage system aminomethyltransferase GcvT 0.68 IAI46_10580 nucleoside-specific channel-forming protein Tsx low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.78 GFF3005 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) 0.68 GFF4313 Nucleoside-specific channel-forming protein Tsx precursor low > 78
Enterobacter sp. TBS_079 0.78 MPMX20_03764 Aminomethyltransferase 0.71 MPMX20_01003 Nucleoside-specific channel-forming protein Tsx low > 85
Escherichia coli Nissle 1917 0.78 ECOLIN_RS16175 glycine cleavage system aminomethyltransferase GcvT 0.72 ECOLIN_RS02490 nucleoside-specific channel-forming protein Tsx low > 55
Klebsiella michiganensis M5al 0.78 BWI76_RS23880 Aminomethyltransferase (EC 2.1.2.10) (from data) 0.71 BWI76_RS06335 nucleoside-specific channel-forming protein Tsx low > 92
Escherichia coli ECRC62 0.78 BNILDI_09970 gcvT glycine cleavage system aminomethyltransferase GcvT 0.71 BNILDI_22830 tsx nucleoside-specific channel-forming protein Tsx low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.78 OHPLBJKB_00810 Aminomethyltransferase 0.71 OHPLBJKB_03265 Nucleoside-specific channel-forming protein Tsx low > 73
Escherichia coli BW25113 0.78 b2905 gcvT glycine cleavage system aminomethyltransferase T (NCBI) 0.71 b0411 tsx nucleoside channel, receptor of phage T6 and colicin K (NCBI) low > 76
Escherichia coli BL21 0.78 ECD_02737 aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex 0.71 ECD_00359 nucleoside channel, receptor of phage T6 and colicin K low > 61
Escherichia coli ECOR27 0.78 NOLOHH_11435 gcvT glycine cleavage system aminomethyltransferase GcvT 0.71 NOLOHH_01415 tsx nucleoside-specific channel-forming protein Tsx low > 75
Escherichia fergusonii Becca 0.77 EFB2_00997 Aminomethyltransferase 0.72 EFB2_03646 Nucleoside-specific channel-forming protein Tsx low > 86
Escherichia coli ECOR38 0.77 HEPCGN_18810 gcvT glycine cleavage system aminomethyltransferase GcvT 0.71 HEPCGN_07110 tsx nucleoside-specific channel-forming protein Tsx low > 87
Enterobacter asburiae PDN3 0.77 EX28DRAFT_2957 glycine cleavage system T protein 0.71 EX28DRAFT_2559 Nucleoside-binding outer membrane protein low > 76
Escherichia coli ECRC102 0.77 NIAGMN_17285 gcvT glycine cleavage system aminomethyltransferase GcvT 0.71 NIAGMN_06525 tsx nucleoside-specific channel-forming protein Tsx — —
Escherichia coli ECRC100 0.77 OKFHMN_19520 gcvT glycine cleavage system aminomethyltransferase GcvT 0.71 OKFHMN_08470 tsx nucleoside-specific channel-forming protein Tsx low > 80
Escherichia coli ECRC101 0.77 MCAODC_10040 gcvT glycine cleavage system aminomethyltransferase GcvT 0.71 MCAODC_27695 tsx nucleoside-specific channel-forming protein Tsx low > 87
Escherichia coli ECRC99 0.77 KEDOAH_08620 gcvT glycine cleavage system aminomethyltransferase GcvT 0.71 KEDOAH_19495 tsx nucleoside-specific channel-forming protein Tsx — —
Escherichia coli ECRC98 0.77 JDDGAC_23160 gcvT glycine cleavage system aminomethyltransferase GcvT 0.71 JDDGAC_12125 tsx nucleoside-specific channel-forming protein Tsx low > 86
Pantoea sp. MT58 0.77 IAI47_03765 glycine cleavage system aminomethyltransferase GcvT 0.74 IAI47_17615 nucleoside-specific channel-forming protein Tsx low > 76
Shewanella loihica PV-4 0.64 Shew_3064 gcvT glycine cleavage system aminomethyltransferase T (RefSeq) 0.12 Shew_2816 nucleoside-specific channel-forming protein, Tsx (RefSeq) — —
Shewanella oneidensis MR-1 0.64 SO0779 gcvT glycine cleavage system T protein (NCBI ptt file) 0.12 SO1215 outer membrane protein OmpK, putative (NCBI ptt file) low > 76
Pseudomonas syringae pv. syringae B728a 0.54 Psyr_0246 aminomethyltransferase 0.49 Psyr_3858 Nucleoside-specific channel-forming protein, Tsx low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.54 Psyr_0246 aminomethyltransferase 0.49 Psyr_3858 Nucleoside-specific channel-forming protein, Tsx low > 86
Pseudomonas simiae WCS417 0.53 PS417_27255 glycine cleavage system protein T 0.48 PS417_11505 ion channel protein Tsx low > 88
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS28915 glycine cleavage system aminomethyltransferase GcvT 0.49 PFLU_RS12095 nucleoside-specific channel-forming protein Tsx low > 109
Pseudomonas fluorescens SBW25 0.53 PFLU_RS28915 glycine cleavage system aminomethyltransferase GcvT 0.49 PFLU_RS12095 nucleoside-specific channel-forming protein Tsx low > 109
Pseudomonas fluorescens FW300-N2E3 0.53 AO353_08735 glycine cleavage system protein T 0.49 AO353_00055 ion channel protein Tsx low > 101
Pseudomonas fluorescens FW300-N2E2 0.52 Pf6N2E2_4485 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) 0.49 Pf6N2E2_2153 Nucleoside-specific channel-forming protein Tsx precursor low > 103
Pseudomonas fluorescens FW300-N2C3 0.52 AO356_13035 glycine cleavage system protein T 0.49 AO356_01400 ion channel protein Tsx low > 104
Vibrio cholerae E7946 ATCC 55056 0.22 CSW01_15350 glycine cleavage system aminomethyltransferase T 0.12 CSW01_11725 hypothetical protein low > 62

Not shown: 60 genomes with orthologs for HER17_RS18005 only; 1 genomes with orthologs for HER17_RS03255 only