Conservation of cofitness between HER17_RS00665 and HER17_RS02990 in Pectobacterium carotovorum WPP14

36 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS00665 envelope stress response regulator transcription factor CpxR 1.0 HER17_RS02990 RNA polymerase-associated protein RapA 0.88 2
Pantoea sp. MT58 0.92 IAI47_00760 envelope stress response regulator transcription factor CpxR 0.79 IAI47_16055 RNA polymerase-associated protein RapA low > 76
Erwinia tracheiphila SCR3 0.92 LU632_RS21855 cpxR envelope stress response regulator transcription factor CpxR 0.77 LU632_RS02805 rapA RNA polymerase-associated protein RapA low > 74
Rahnella sp. WP5 0.90 EX31_RS14320 envelope stress response regulator transcription factor CpxR 0.80 EX31_RS03745 RNA polymerase-associated protein RapA low > 89
Dickeya dadantii 3937 0.89 DDA3937_RS00780 envelope stress response regulator transcription factor CpxR 0.87 DDA3937_RS18235 RNA polymerase-associated protein RapA — —
Dickeya dianthicola ME23 0.88 DZA65_RS21610 envelope stress response regulator transcription factor CpxR 0.86 DZA65_RS19310 RNA polymerase-associated protein RapA low > 75
Dickeya dianthicola 67-19 0.88 HGI48_RS20595 envelope stress response regulator transcription factor CpxR 0.87 HGI48_RS18170 RNA polymerase-associated protein RapA low > 71
Enterobacter sp. TBS_079 0.86 MPMX20_04556 Transcriptional regulatory protein CpxR 0.79 MPMX20_00753 RNA polymerase-associated protein RapA low > 85
Enterobacter asburiae PDN3 0.86 EX28DRAFT_4387 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 0.79 EX28DRAFT_3651 Superfamily II DNA/RNA helicases, SNF2 family low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.86 GFF2280 Copper-sensing two-component system response regulator CpxR 0.79 GFF183 RNA polymerase associated protein RapA (EC 3.6.1.-) low > 78
Escherichia coli HS(pFamp)R (ATCC 700891) 0.85 OHPLBJKB_04138 Transcriptional regulatory protein CpxR 0.79 OHPLBJKB_03599 RNA polymerase-associated protein RapA low > 73
Escherichia coli ECRC98 0.85 JDDGAC_17470 cpxR envelope stress response regulator transcription factor CpxR 0.79 JDDGAC_14395 rapA RNA polymerase-associated protein RapA 0.93 4
Escherichia coli ECRC99 0.85 KEDOAH_14310 cpxR envelope stress response regulator transcription factor CpxR 0.79 KEDOAH_17355 rapA RNA polymerase-associated protein RapA — —
Escherichia coli ECOR27 0.85 NOLOHH_05980 cpxR envelope stress response regulator transcription factor CpxR 0.79 NOLOHH_03145 rapA RNA polymerase-associated protein RapA low > 75
Escherichia coli BL21 0.85 ECD_03798 response regulator in two-component regulatory system with CpxA 0.79 ECD_00061 RNA polymerase remodeling/recycling factor ATPase; RNA polymerase-associated, ATP-dependent RNA translocase low > 61
Escherichia coli ECRC101 0.85 MCAODC_04345 cpxR envelope stress response regulator transcription factor CpxR 0.79 MCAODC_01315 rapA RNA polymerase-associated protein RapA low > 87
Klebsiella michiganensis M5al 0.85 BWI76_RS00720 DNA-binding response regulator 0.79 BWI76_RS04570 RNA polymerase-associated protein RapA low > 92
Escherichia coli Nissle 1917 0.85 ECOLIN_RS22540 envelope stress response regulator transcription factor CpxR 0.79 ECOLIN_RS00315 RNA polymerase-associated protein RapA — —
Escherichia coli BW25113 0.85 b3912 cpxR DNA-binding response regulator in two-component regulatory system with CpxA (NCBI) 0.79 b0059 hepA ATP-dependent helicase HepA (NCBI) low > 76
Escherichia coli ECRC62 0.85 BNILDI_05545 cpxR envelope stress response regulator transcription factor CpxR 0.79 BNILDI_08460 rapA RNA polymerase-associated protein RapA low > 75
Escherichia coli ECRC102 0.85 NIAGMN_11600 cpxR envelope stress response regulator transcription factor CpxR 0.79 NIAGMN_08650 rapA RNA polymerase-associated protein RapA — —
Escherichia coli ECRC100 0.85 OKFHMN_13845 cpxR envelope stress response regulator transcription factor CpxR 0.79 OKFHMN_10800 rapA RNA polymerase-associated protein RapA low > 80
Escherichia coli ECOR38 0.85 HEPCGN_12490 cpxR envelope stress response regulator transcription factor CpxR 0.79 HEPCGN_08790 rapA RNA polymerase-associated protein RapA low > 87
Escherichia fergusonii Becca 0.85 EFB2_04705 Transcriptional regulatory protein CpxR 0.79 EFB2_03986 RNA polymerase-associated protein RapA 0.34 14
Serratia liquefaciens MT49 0.84 IAI46_24660 envelope stress response regulator transcription factor CpxR 0.85 IAI46_03275 RNA polymerase-associated protein RapA low > 86
Vibrio cholerae E7946 ATCC 55056 0.56 CSW01_13590 DNA-binding response regulator 0.64 CSW01_12705 RNA polymerase-associated protein RapA low > 62
Shewanella loihica PV-4 0.54 Shew_3570 two component transcriptional regulator (RefSeq) 0.58 Shew_0457 ATP-dependent helicase HepA (RefSeq) low > 60
Shewanella amazonensis SB2B 0.52 Sama_3432 response regulator receiver protein (RefSeq) 0.57 Sama_3131 ATP-dependent helicase HepA (RefSeq) low > 62
Shewanella sp. ANA-3 0.50 Shewana3_0253 two component transcriptional regulator (RefSeq) 0.59 Shewana3_0574 ATP-dependent helicase HepA (RefSeq) low > 73
Shewanella oneidensis MR-1 0.50 SO4477 cpxR transcriptional regulatory protein CpxR (NCBI ptt file) 0.58 SO0575 hepA RNA polymerase-associated protein HepA (NCBI ptt file) low > 76
Dyella japonica UNC79MFTsu3.2 0.48 ABZR86_RS07815 response regulator 0.32 ABZR86_RS09245 RNA polymerase-associated protein RapA low > 74
Alteromonas macleodii MIT1002 0.47 MIT1002_00477 Response regulator ArlR 0.43 MIT1002_00659 RNA polymerase-associated protein RapA low > 70
Pseudomonas stutzeri RCH2 0.40 Psest_1884 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 0.47 Psest_1327 Superfamily II DNA/RNA helicases, SNF2 family low > 67
Pseudomonas fluorescens FW300-N1B4 0.39 Pf1N1B4_3547 DNA-binding response regulator 0.48 Pf1N1B4_3224 RNA polymerase associated protein RapA (EC 3.6.1.-) low > 87
Pseudomonas sp. S08-1 0.39 OH686_20775 Two-component transcriptional response regulator, LuxR family 0.47 OH686_19955 RNA polymerase associated protein RapA low > 80
Pseudomonas fluorescens GW456-L13 0.39 PfGW456L13_4409 DNA-binding response regulator 0.47 PfGW456L13_4599 RNA polymerase associated protein RapA (EC 3.6.1.-) low > 87
Pseudomonas sp. RS175 0.39 PFR28_03323 Transcriptional regulatory protein CpxR 0.48 PFR28_00612 RNA polymerase-associated protein RapA low > 88

Not shown: 2 genomes with orthologs for HER17_RS00665 only; 14 genomes with orthologs for HER17_RS02990 only