Conservation of cofitness between HEPCGN_20545 and HEPCGN_16585 in Escherichia coli ECOR38

34 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli ECOR38 1.0 HEPCGN_20545 lepA translation elongation factor 4 1.0 HEPCGN_16585 csrD RNase E specificity factor CsrD 0.81 7
Escherichia coli BL21 1.00 ECD_02463 back-translocating elongation factor EF4, GTPase 0.99 ECD_03111 targeting factor for csrBC sRNA degradation low > 61
Escherichia coli ECRC100 1.00 OKFHMN_21400 lepA translation elongation factor 4 0.99 OKFHMN_17720 csrD RNase E specificity factor CsrD low > 80
Escherichia coli ECRC62 1.00 BNILDI_11875 lepA translation elongation factor 4 0.99 BNILDI_02015 csrD RNase E specificity factor CsrD low > 75
Escherichia coli ECRC98 1.00 JDDGAC_25065 lepA translation elongation factor 4 0.99 JDDGAC_21345 csrD RNase E specificity factor CsrD low > 86
Escherichia coli Nissle 1917 1.00 ECOLIN_RS14540 translation elongation factor 4 0.98 ECOLIN_RS18635 RNase E specificity factor CsrD low > 55
Escherichia coli ECRC99 1.00 KEDOAH_06820 lepA translation elongation factor 4 0.99 KEDOAH_10430 csrD RNase E specificity factor CsrD — —
Escherichia coli BW25113 1.00 b2569 lepA GTP-binding protein LepA (NCBI) 0.99 b3252 yhdA conserved inner membrane protein (NCBI) low > 76
Escherichia coli ECRC102 1.00 NIAGMN_19170 lepA translation elongation factor 4 0.99 NIAGMN_15480 csrD RNase E specificity factor CsrD — —
Escherichia coli ECOR27 1.00 NOLOHH_13075 lepA translation elongation factor 4 0.99 NOLOHH_09505 csrD RNase E specificity factor CsrD low > 75
Escherichia coli ECRC101 1.00 MCAODC_11930 lepA translation elongation factor 4 0.99 MCAODC_08240 csrD RNase E specificity factor CsrD low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_01138 Elongation factor 4 0.99 OHPLBJKB_00453 RNase E specificity factor CsrD low > 73
Escherichia fergusonii Becca 1.00 EFB2_01327 Elongation factor 4 0.99 EFB2_00579 RNase E specificity factor CsrD low > 86
Klebsiella michiganensis M5al 0.94 BWI76_RS21335 elongation factor 4 0.76 BWI76_RS25505 RNase E specificity factor CsrD — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.94 GFF2477 Translation elongation factor LepA 0.84 GFF2133 RNase E specificity factor CsrD low > 78
Enterobacter asburiae PDN3 0.94 EX28DRAFT_0076 elongation factor 4 0.79 EX28DRAFT_3302 diguanylate cyclase (GGDEF) domain low > 76
Enterobacter sp. TBS_079 0.93 MPMX20_03440 Elongation factor 4 0.79 MPMX20_04158 RNase E specificity factor CsrD low > 85
Dickeya dadantii 3937 0.92 DDA3937_RS15745 elongation factor 4 0.51 DDA3937_RS01425 RNase E specificity factor CsrD low > 74
Dickeya dianthicola 67-19 0.92 HGI48_RS15830 elongation factor 4 0.52 HGI48_RS01345 RNase E specificity factor CsrD low > 71
Dickeya dianthicola ME23 0.92 DZA65_RS16910 elongation factor 4 0.52 DZA65_RS01405 RNase E specificity factor CsrD low > 75
Erwinia tracheiphila SCR3 0.92 LU632_RS15395 lepA translation elongation factor 4 0.51 LU632_RS21455 csrD RNase E specificity factor CsrD low > 74
Pectobacterium carotovorum WPP14 0.92 HER17_RS05805 translation elongation factor 4 0.52 HER17_RS20175 RNase E specificity factor CsrD low > 75
Serratia liquefaciens MT49 0.91 IAI46_19560 elongation factor 4 0.56 IAI46_22725 RNase E specificity factor CsrD low > 86
Rahnella sp. WP5 0.91 EX31_RS21825 elongation factor 4 0.49 EX31_RS12230 RNase E specificity factor CsrD low > 89
Pantoea sp. MT58 0.89 IAI47_04870 elongation factor 4 0.51 IAI47_02430 RNase E specificity factor CsrD 0.40 76
Vibrio cholerae E7946 ATCC 55056 0.85 CSW01_12465 elongation factor 4 0.26 CSW01_02100 RNase E specificity factor CsrD low > 62
Shewanella sp. ANA-3 0.83 Shewana3_3028 GTP-binding protein LepA (RefSeq) 0.19 Shewana3_3668 regulatory protein CsrD (RefSeq) low > 73
Shewanella oneidensis MR-1 0.83 SO1346 lepA GTP-binding protein LepA (NCBI ptt file) 0.20 SO4116 mshH MSHA biogenesis protein MshH (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.82 Shew_1052 GTP-binding protein LepA (RefSeq) 0.19 Shew_0384 regulatory protein CsrD (RefSeq) low > 60
Shewanella amazonensis SB2B 0.80 Sama_0878 GTP-binding protein LepA (RefSeq) 0.19 Sama_0449 regulatory protein CsrD (RefSeq) low > 62
Pseudomonas sp. RS175 0.76 PFR28_03525 Elongation factor 4 0.08 PFR28_04783 hypothetical protein — —
Pseudomonas putida KT2440 0.76 PP_1431 Elongation factor 4 0.07 PP_0165 GGDEF domain protein — —
Pseudomonas fluorescens FW300-N2C3 0.75 AO356_17485 elongation factor 4 0.09 AO356_10580 hypothetical protein low > 104
Pseudomonas fluorescens FW300-N2E3 0.75 AO353_04520 elongation factor 4 0.09 AO353_11170 hypothetical protein low > 101
Pseudomonas fluorescens FW300-N1B4 0.75 Pf1N1B4_895 Translation elongation factor LepA 0.10 Pf1N1B4_1802 Membrane bound c-di-GMP receptor LapD — —

Not shown: 67 genomes with orthologs for HEPCGN_20545 only; 0 genomes with orthologs for HEPCGN_16585 only