Conservation of cofitness between GFF7272 and GFF5519 in Variovorax sp. SCN45

40 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Variovorax sp. SCN45 1.0 GFF7272 D-glucarate permease 1.0 GFF5519 Transcriptional regulator 0.49 20
Rahnella sp. WP5 0.54 EX31_RS03160 MFS transporter 0.19 EX31_RS09835 DeoR/GlpR transcriptional regulator low > 89
Escherichia coli ECOR27 0.53 NOLOHH_12100 gudP galactarate/glucarate/glycerate transporter GudP 0.24 NOLOHH_10120 agaR aga operon transcriptional regulator AgaR low > 75
Escherichia coli BL21 0.53 ECD_02634 putative D-glucarate transporter 0.24 ECD_02996 transcriptional repressor of the aga regulon low > 61
Escherichia coli ECRC62 0.53 BNILDI_10605 gudP galactarate/glucarate/glycerate transporter GudP 0.24 BNILDI_01410 agaR aga operon transcriptional regulator AgaR low > 75
Escherichia fergusonii Becca 0.53 EFB2_01128 putative glucarate transporter 0.23 EFB2_00690 Glucitol operon repressor low > 86
Escherichia coli BW25113 0.53 b2789 gudP predicted D-glucarate transporter (NCBI) 0.24 b3131 agaR DNA-binding transcriptional dual regulator (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.53 OHPLBJKB_00942 putative glucarate transporter 0.24 OHPLBJKB_00572 Glucitol operon repressor low > 73
Escherichia coli ECOR38 0.53 HEPCGN_19475 gudP galactarate/glucarate/glycerate transporter GudP 0.24 HEPCGN_17175 agaR aga operon transcriptional regulator AgaR low > 87
Escherichia coli ECRC101 0.53 MCAODC_10745 gudP galactarate/glucarate/glycerate transporter GudP 0.24 MCAODC_08850 agaR aga operon transcriptional regulator AgaR low > 87
Escherichia coli ECRC99 0.53 KEDOAH_07910 gudP galactarate/glucarate/glycerate transporter GudP 0.24 KEDOAH_09810 agaR aga operon transcriptional regulator AgaR — —
Escherichia coli ECRC102 0.53 NIAGMN_17990 gudP galactarate/glucarate/glycerate transporter GudP 0.24 NIAGMN_16100 agaR aga operon transcriptional regulator AgaR — —
Escherichia coli ECRC98 0.53 JDDGAC_23885 gudP galactarate/glucarate/glycerate transporter GudP 0.24 JDDGAC_21970 agaR aga operon transcriptional regulator AgaR low > 86
Escherichia coli ECRC100 0.53 OKFHMN_20220 gudP galactarate/glucarate/glycerate transporter GudP 0.24 OKFHMN_18340 agaR aga operon transcriptional regulator AgaR low > 80
Escherichia coli Nissle 1917 0.53 ECOLIN_RS15540 galactarate/glucarate/glycerate transporter GudP 0.24 ECOLIN_RS26075 aga operon transcriptional regulator AgaR — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.53 GFF4843 D-glucarate permease 0.21 GFF2701 Transcriptional regulatory protein YciT low > 78
Klebsiella michiganensis M5al 0.53 BWI76_RS22835 MFS transporter 0.49 BWI76_RS19830 DeoR family transcriptional regulator — —
Pectobacterium carotovorum WPP14 0.53 HER17_RS04075 MFS transporter 0.31 HER17_RS09155 DeoR/GlpR family DNA-binding transcription regulator low > 75
Enterobacter asburiae PDN3 0.52 EX28DRAFT_2870 D-galactonate transporter 0.52 EX28DRAFT_1178 transcriptional regulator, DeoR family low > 76
Enterobacter sp. TBS_079 0.52 MPMX20_03659 putative glucarate transporter 0.52 MPMX20_02286 Glycerol-3-phosphate regulon repressor low > 85
Pseudomonas fluorescens SBW25-INTG 0.51 PFLU_RS04245 MFS transporter 0.34 PFLU_RS17615 DeoR/GlpR transcriptional regulator low > 109
Pseudomonas fluorescens SBW25 0.51 PFLU_RS04245 MFS transporter 0.34 PFLU_RS17615 DeoR/GlpR transcriptional regulator low > 109
Pseudomonas fluorescens FW300-N2E2 0.51 Pf6N2E2_3297 D-galactarate permease 0.27 Pf6N2E2_1442 Transcriptional regulators of sugar metabolism low > 103
Pseudomonas fluorescens FW300-N2C3 0.51 AO356_07175 glucarate transporter 0.27 AO356_28445 decarboxylase low > 104
Pseudomonas sp. RS175 0.51 PFR28_00144 putative glucarate transporter 0.26 PFR28_02094 Glycerol-3-phosphate regulon repressor low > 88
Erwinia tracheiphila SCR3 0.51 LU632_RS06310 MFS transporter 0.30 LU632_RS24935 DeoR/GlpR family DNA-binding transcription regulator low > 74
Paraburkholderia bryophila 376MFSha3.1 0.51 H281DRAFT_05318 MFS transporter, ACS family, glucarate transporter 0.57 H281DRAFT_02693 transcriptional regulator, DeoR family low > 103
Pseudomonas simiae WCS417 0.51 PS417_04205 D-galacturonate transporter (MFS superfamily) (from data) 0.33 PS417_15630 DeoR faimly transcriptional regulator low > 88
Ralstonia solanacearum IBSBF1503 0.51 RALBFv3_RS19740 MFS transporter 0.23 RALBFv3_RS17865 DeoR/GlpR transcriptional regulator low > 76
Ralstonia solanacearum UW163 0.51 UW163_RS19435 MFS transporter 0.23 UW163_RS21275 DeoR/GlpR transcriptional regulator — —
Burkholderia phytofirmans PsJN 0.50 BPHYT_RS24150 glucarate transporter 0.61 BPHYT_RS24590 DeoR faimly transcriptional regulator low > 109
Paraburkholderia graminis OAS925 0.50 ABIE53_006507 ACS family glucarate transporter-like MFS transporter 0.62 ABIE53_006433 DeoR/GlpR family transcriptional regulator of sugar metabolism low > 113
Paraburkholderia sabiae LMG 24235 0.50 QEN71_RS33565 MFS transporter 0.59 QEN71_RS08525 DeoR/GlpR family DNA-binding transcription regulator low > 153
Dickeya dadantii 3937 0.50 DDA3937_RS17055 MFS transporter 0.51 DDA3937_RS09940 DeoR/GlpR transcriptional regulator low > 74
Dickeya dianthicola 67-19 0.50 HGI48_RS17110 MFS transporter 0.49 HGI48_RS09945 DeoR/GlpR transcriptional regulator low > 71
Dickeya dianthicola ME23 0.50 DZA65_RS18185 MFS transporter 0.51 DZA65_RS10280 DeoR/GlpR transcriptional regulator low > 75
Pseudomonas fluorescens FW300-N1B4 0.50 Pf1N1B4_1108 D-galactarate permease 0.34 Pf1N1B4_4372 Galactitol utilization operon repressor low > 87
Azospirillum sp. SherDot2 0.49 MPMX19_02893 putative glucarate transporter 0.16 MPMX19_02950 Deoxyribose operon repressor low > 112
Pantoea sp. MT58 0.49 IAI47_04080 MFS transporter 0.51 IAI47_09970 DeoR/GlpR transcriptional regulator low > 76
Serratia liquefaciens MT49 0.34 IAI46_16925 MFS transporter 0.55 IAI46_11580 DeoR/GlpR transcriptional regulator low > 86
Pseudomonas sp. S08-1 0.11 OH686_06110 Uncharacterized MFS-type transporter 0.19 OH686_12730 Transcriptional regulator of glmS gene, DeoR family low > 80

Not shown: 21 genomes with orthologs for GFF7272 only; 15 genomes with orthologs for GFF5519 only