Conservation of cofitness between PS417_22115 and PS417_01950 in Pseudomonas simiae WCS417

20 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_22115 transcriptional regulator 1.0 PS417_01950 malate dehydrogenase 0.27 4
Pseudomonas fluorescens SBW25 1.00 PFLU_RS23730 MurR/RpiR family transcriptional regulator 1.00 PFLU_RS01995 malate dehydrogenase 0.63 4
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS23730 MurR/RpiR family transcriptional regulator 1.00 PFLU_RS01995 malate dehydrogenase 0.38 9
Pseudomonas fluorescens GW456-L13 0.97 PfGW456L13_1900 Phosphogluconate repressor HexR, RpiR family 0.94 PfGW456L13_283 NADP-dependent malic enzyme (EC 1.1.1.40) 0.23 84
Pseudomonas sp. RS175 0.96 PFR28_00572 HTH-type transcriptional regulator HexR 0.93 PFR28_05005 NADP-dependent malic enzyme low > 88
Pseudomonas fluorescens FW300-N2C3 0.96 AO356_05165 transcriptional regulator 0.94 AO356_09425 malate dehydrogenase 0.51 2
Pseudomonas fluorescens FW300-N2E2 0.96 Pf6N2E2_2886 Phosphogluconate repressor HexR, RpiR family 0.94 Pf6N2E2_3762 NADP-dependent malic enzyme (EC 1.1.1.40) low > 103
Pseudomonas fluorescens FW300-N2E3 0.95 AO353_03365 transcriptional regulator 0.95 AO353_12460 malate dehydrogenase 0.34 17
Pseudomonas fluorescens FW300-N1B4 0.95 Pf1N1B4_590 Phosphogluconate repressor HexR, RpiR family 0.96 Pf1N1B4_1545 NADP-dependent malic enzyme (EC 1.1.1.40) 0.56 1
Pseudomonas syringae pv. syringae B728a ΔmexB 0.92 Psyr_1119 Helix-turn-helix protein RpiR:Sugar isomerase (SIS) 0.91 Psyr_0401 Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+) low > 86
Pseudomonas syringae pv. syringae B728a 0.92 Psyr_1119 Helix-turn-helix protein RpiR:Sugar isomerase (SIS) 0.91 Psyr_0401 Malate dehydrogenase (oxaloacetate decarboxylating) (NADP+) 0.60 1
Pseudomonas putida KT2440 0.88 PP_1021 DNA-binding transcriptional regulator 0.90 PP_5085 malic enzyme B 0.24 23
Pseudomonas stutzeri RCH2 0.88 Psest_0851 Transcriptional regulators 0.89 Psest_3721 Malic enzyme 0.30 6
Pseudomonas sp. S08-1 0.87 OH686_02440 Phosphogluconate repressor HexR, RpiR family 0.88 OH686_10060 NADP-dependent malic enzyme low > 80
Marinobacter adhaerens HP15 0.61 HP15_2180 transcriptional regulator, RpiR family protein 0.74 HP15_472 malate dehydrogenase (oxaloacetate-decarboxylating), NADP(+) low > 73
Vibrio cholerae E7946 ATCC 55056 0.57 CSW01_05825 transcriptional regulator HexR 0.63 CSW01_13540 malate dehydrogenase low > 62
Shewanella amazonensis SB2B 0.57 Sama_1813 DNA-binding transcriptional regulator HexR (RefSeq) 0.65 Sama_0448 malate dehydrogenase (RefSeq) low > 62
Shewanella oneidensis MR-1 0.56 SO2490 transcriptional regulator, RpiR family (NCBI ptt file) 0.65 SO4118 malate oxidoreductase, putative (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.56 Shewana3_2152 DNA-binding transcriptional regulator HexR (RefSeq) 0.64 Shewana3_3669 malic enzyme, NAD-binding (RefSeq) low > 73
Shewanella loihica PV-4 0.55 Shew_2049 DNA-binding transcriptional regulator HexR (RefSeq) 0.65 Shew_0383 malate dehydrogenase (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.52 MIT1002_02408 putative HTH-type transcriptional regulator YbbH 0.68 MIT1002_03668 NADP-dependent malic enzyme — —

Not shown: 26 genomes with orthologs for PS417_22115 only; 3 genomes with orthologs for PS417_01950 only