Conservation of cofitness between PS417_02040 and PS417_19475 in Pseudomonas simiae WCS417

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_02040 3-hydroxylacyl-ACP dehydratase 1.0 PS417_19475 pseudouridine synthase 0.21 5
Pseudomonas fluorescens SBW25-INTG 0.91 PFLU_RS02085 hotdog family protein 0.99 PFLU_RS21445 RluA family pseudouridine synthase low > 109
Pseudomonas fluorescens SBW25 0.91 PFLU_RS02085 hotdog family protein 0.99 PFLU_RS21445 RluA family pseudouridine synthase low > 109
Pseudomonas fluorescens FW300-N1B4 0.86 Pf1N1B4_1518 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) 0.96 Pf1N1B4_3753 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) — —
Pseudomonas fluorescens FW300-N2E3 0.84 AO353_12615 3-hydroxylacyl-ACP dehydratase 0.96 AO353_02385 pseudouridine synthase — —
Pseudomonas fluorescens GW456-L13 0.82 PfGW456L13_251 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) 0.97 PfGW456L13_4194 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) — —
Pseudomonas fluorescens FW300-N2C3 0.82 AO356_09215 3-hydroxylacyl-ACP dehydratase 0.95 AO356_19405 pseudouridine synthase — —
Pseudomonas fluorescens FW300-N2E2 0.82 Pf6N2E2_3727 3-hydroxydecanoyl-[ACP] dehydratase (EC 4.2.1.60) 0.95 Pf6N2E2_5794 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) low > 103
Pseudomonas sp. RS175 0.78 PFR28_05023 hypothetical protein 0.94 PFR28_03154 Dual-specificity RNA pseudouridine synthase RluA low > 88
Pseudomonas syringae pv. syringae B728a 0.75 Psyr_0424 conserved hypothetical protein 0.89 Psyr_1610 ribosomal large subunit pseudouridine synthase A low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.75 Psyr_0424 conserved hypothetical protein 0.89 Psyr_1610 ribosomal large subunit pseudouridine synthase A low > 86
Pseudomonas sp. S08-1 0.74 OH686_09965 3-hydroxydecanoyl-[ACP] dehydratase 0.94 OH686_19760 LSU rRNA pseudouridine(746) synthase or tRNA pseudouridine(32) synthase low > 80
Pseudomonas stutzeri RCH2 0.68 Psest_3702 Predicted 3-hydroxylacyl-(acyl carrier protein) dehydratase 0.89 Psest_2948 pseudouridine synthase, RluA family low > 67
Shewanella amazonensis SB2B 0.31 Sama_3392 thioester dehydrase family protein (RefSeq) 0.43 Sama_0606 pseudouridylate synthase (RefSeq) low > 62
Kangiella aquimarina DSM 16071 0.31 B158DRAFT_0421 Predicted 3-hydroxylacyl-(acyl carrier protein) dehydratase 0.44 B158DRAFT_1514 Pseudouridylate synthases, 23S RNA-specific low > 40
Serratia liquefaciens MT49 0.30 IAI46_04095 hotdog family protein 0.47 IAI46_03270 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 86
Escherichia coli ECRC102 0.30 NIAGMN_14340 3-hydroxy-fatty acyl-ACP dehydratase 0.48 NIAGMN_08655 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA — —
Escherichia coli ECRC99 0.30 KEDOAH_11570 3-hydroxy-fatty acyl-ACP dehydratase 0.48 KEDOAH_17350 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA — —
Escherichia coli Nissle 1917 0.30 ECOLIN_RS05450 3-hydroxy-fatty acyl-ACP dehydratase 0.49 ECOLIN_RS00310 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA — —
Escherichia coli ECRC101 0.30 OKFHMN_16570 3-hydroxy-fatty acyl-ACP dehydratase 0.48 OKFHMN_10805 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA — —
Escherichia fergusonii Becca 0.30 EFB2_03037 hypothetical protein 0.49 EFB2_03987 Dual-specificity RNA pseudouridine synthase RluA low > 86
Escherichia coli ECRC98 0.30 JDDGAC_20200 3-hydroxy-fatty acyl-ACP dehydratase 0.48 JDDGAC_14400 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA — —
Escherichia coli ECRC101 0.30 MCAODC_07090 3-hydroxy-fatty acyl-ACP dehydratase 0.48 MCAODC_01320 rluA bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA — —
Pantoea sp. MT58 0.29 IAI47_12320 hotdog family protein 0.50 IAI47_16060 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 76
Shewanella sp. ANA-3 0.29 Shewana3_0328 thioester dehydrase family protein (RefSeq) 0.46 Shewana3_0799 ribosomal large subunit pseudouridine synthase A (RefSeq) low > 73
Dickeya dianthicola 67-19 0.27 HGI48_RS21525 hotdog family protein 0.47 HGI48_RS18175 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 71
Dickeya dianthicola ME23 0.26 DZA65_RS22505 hotdog family protein 0.48 DZA65_RS19315 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 75
Rahnella sp. WP5 0.26 EX31_RS21245 hotdog family protein 0.49 EX31_RS03750 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA low > 89
Enterobacter sp. TBS_079 0.23 MPMX20_04370 hypothetical protein 0.48 MPMX20_00752 Dual-specificity RNA pseudouridine synthase RluA low > 85
Enterobacter asburiae PDN3 0.22 EX28DRAFT_4092 Predicted 3-hydroxylacyl-(acyl carrier protein) dehydratase 0.48 EX28DRAFT_3650 pseudouridine synthase, RluA family low > 76

Not shown: 11 genomes with orthologs for PS417_02040 only; 23 genomes with orthologs for PS417_19475 only