Conservation of cofitness between GFF4682 and GFF2599 in Variovorax sp. SCN45

31 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Variovorax sp. SCN45 1.0 GFF4682 Transcriptional regulator, MerR family 1.0 GFF2599 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.47 13
Variovorax sp. OAS795 0.89 ABID97_RS20720 Cd(II)/Pb(II)-responsive transcriptional regulator 0.73 ABID97_RS19715 shikimate dehydrogenase low > 91
Pseudomonas fluorescens GW456-L13 0.55 PfGW456L13_958 Cd(II)/Pb(II)-responsive transcriptional regulator 0.15 PfGW456L13_1427 Quinate/shikimate 5-dehydrogenase I delta (EC 1.1.1.25) low > 87
Pseudomonas fluorescens FW300-N2C3 0.55 AO356_10375 Cd(II)/Pb(II)-responsive transcriptional regulator 0.31 AO356_27475 shikimate dehydrogenase low > 104
Pseudomonas fluorescens FW300-N2E2 0.55 Pf6N2E2_3947 Cd(II)/Pb(II)-responsive transcriptional regulator 0.15 Pf6N2E2_5061 Quinate/shikimate 5-dehydrogenase I delta (EC 1.1.1.25) low > 103
Pseudomonas putida KT2440 0.54 PP_5140 Transcriptional regulator, MerR family 0.29 PP_2608 Shikimate dehydrogenase family protein low > 96
Pseudomonas syringae pv. syringae B728a ΔmexB 0.54 Psyr_4838 transcriptional regulator, MerR family 0.14 Psyr_2132 shikimate dehydrogenase low > 86
Pseudomonas syringae pv. syringae B728a 0.54 Psyr_4838 transcriptional regulator, MerR family 0.14 Psyr_2132 shikimate dehydrogenase low > 86
Pseudomonas fluorescens FW300-N1B4 0.54 Pf1N1B4_2290 Cd(II)/Pb(II)-responsive transcriptional regulator 0.16 Pf1N1B4_2749 Quinate/shikimate 5-dehydrogenase I delta (EC 1.1.1.25) low > 87
Pseudomonas fluorescens FW300-N2E3 0.53 AO353_08425 Cd(II)/Pb(II)-responsive transcriptional regulator 0.16 AO353_06175 shikimate dehydrogenase low > 101
Herbaspirillum seropedicae SmR1 0.49 HSERO_RS08005 Pb-specific transcription regulator protein 0.39 HSERO_RS18795 shikimate dehydrogenase low > 78
Burkholderia phytofirmans PsJN 0.49 BPHYT_RS00140 MerR family transcriptional regulator 0.29 BPHYT_RS28720 shikimate dehydrogenase low > 109
Castellaniella sp019104865 MT123 0.45 ABCV34_RS08940 Cd(II)/Pb(II)-responsive transcriptional regulator 0.38 ABCV34_RS07320 shikimate dehydrogenase low > 48
Ralstonia sp. UNC404CL21Col 0.43 ABZR87_RS22375 Cd(II)/Pb(II)-responsive transcriptional regulator 0.74 ABZR87_RS19810 ThiF family adenylyltransferase low > 80
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF5105 Transcriptional regulator, MerR family 0.64 GFF5234 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 90
Cupriavidus basilensis FW507-4G11 0.39 RR42_RS19900 MerR family transcriptional regulator 0.74 RR42_RS32445 shikimate dehydrogenase low > 128
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.33 GFF2387 transcriptional regulator, MerR family 0.17 GFF3549 Shikimate/quinate 5-dehydrogenase I beta (EC 1.1.1.282) low > 78
Azospirillum brasilense Sp245 0.33 AZOBR_RS27570 MerR family transcriptional regulator 0.18 AZOBR_RS01765 shikimate 5-dehydrogenase — —
Escherichia coli ECRC102 0.31 NIAGMN_15270 zntR Zn(2+)-responsive transcriptional regulator 0.20 NIAGMN_00865 ydiB quinate/shikimate dehydrogenase — —
Escherichia coli ECRC99 0.31 KEDOAH_10640 zntR Zn(2+)-responsive transcriptional regulator 0.20 KEDOAH_00910 ydiB quinate/shikimate dehydrogenase — —
Escherichia coli ECOR27 0.31 NOLOHH_09300 zntR Zn(2+)-responsive transcriptional regulator 0.20 NOLOHH_17720 ydiB quinate/shikimate dehydrogenase low > 75
Escherichia coli ECRC62 0.31 BNILDI_02220 zntR Zn(2+)-responsive transcriptional regulator 0.20 BNILDI_16510 ydiB quinate/shikimate dehydrogenase low > 75
Escherichia coli ECRC98 0.31 JDDGAC_21130 zntR Zn(2+)-responsive transcriptional regulator 0.20 JDDGAC_01775 ydiB quinate/shikimate dehydrogenase low > 86
Escherichia coli BL21 0.31 ECD_03143 zntA gene transcriptional activator 0.20 ECD_01661 quinate/shikimate 5-dehydrogenase, NAD(P)-binding — —
Escherichia coli ECOR38 0.31 HEPCGN_16330 zntR Zn(2+)-responsive transcriptional regulator 0.20 HEPCGN_05585 ydiB quinate/shikimate dehydrogenase low > 87
Escherichia coli ECRC101 0.31 MCAODC_08030 zntR Zn(2+)-responsive transcriptional regulator 0.20 MCAODC_18210 ydiB quinate/shikimate dehydrogenase low > 87
Escherichia coli ECRC100 0.31 OKFHMN_17500 zntR Zn(2+)-responsive transcriptional regulator 0.20 OKFHMN_27200 ydiB quinate/shikimate dehydrogenase low > 80
Escherichia fergusonii Becca 0.31 EFB2_00531 HTH-type transcriptional regulator ZntR 0.20 EFB2_02300 Quinate/shikimate dehydrogenase low > 86
Escherichia coli Nissle 1917 0.31 ECOLIN_RS18895 Zn(2+)-responsive transcriptional regulator 0.20 ECOLIN_RS09455 quinate/shikimate dehydrogenase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.31 OHPLBJKB_00411 HTH-type transcriptional regulator ZntR 0.20 OHPLBJKB_02032 Quinate/shikimate dehydrogenase low > 73
Escherichia coli BW25113 0.31 b3292 zntR zinc-responsive transcriptional regulator (NCBI) 0.20 b1692 ydiB quinate/shikimate 5-dehydrogenase, NAD(P)-binding (NCBI) low > 76
Klebsiella michiganensis M5al 0.31 BWI76_RS25700 heavy metal-responsive transcriptional regulator 0.63 BWI76_RS16935 shikimate dehydrogenase low > 92

Not shown: 31 genomes with orthologs for GFF4682 only; 6 genomes with orthologs for GFF2599 only