| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 1.0 | GFF2754 | | UPF0028 protein YchK | 1.0 | GFF2133 | | RNase E specificity factor CsrD | 0.93 | 4 |
| Escherichia coli ECOR38 | 0.87 | HEPCGN_25040 | rssA | patatin-like phospholipase RssA | 0.86 | HEPCGN_16585 | csrD | RNase E specificity factor CsrD | low | > 87 |
| Escherichia coli ECRC102 | 0.87 | NIAGMN_27655 | rssA | patatin-like phospholipase RssA | 0.86 | NIAGMN_15480 | csrD | RNase E specificity factor CsrD | — | — |
| Escherichia coli ECOR27 | 0.87 | NOLOHH_20470 | rssA | patatin-like phospholipase RssA | 0.86 | NOLOHH_09505 | csrD | RNase E specificity factor CsrD | low | > 75 |
| Escherichia coli ECRC100 | 0.87 | OKFHMN_28580 | rssA | patatin-like phospholipase RssA | 0.86 | OKFHMN_17720 | csrD | RNase E specificity factor CsrD | low | > 80 |
| Escherichia fergusonii Becca | 0.87 | EFB2_02692 | | putative NTE family protein | 0.86 | EFB2_00579 | | RNase E specificity factor CsrD | low | > 86 |
| Escherichia coli ECRC101 | 0.87 | MCAODC_21680 | rssA | patatin-like phospholipase RssA | 0.86 | MCAODC_08240 | csrD | RNase E specificity factor CsrD | low | > 87 |
| Escherichia coli ECRC99 | 0.87 | KEDOAH_25575 | rssA | patatin-like phospholipase RssA | 0.86 | KEDOAH_10430 | csrD | RNase E specificity factor CsrD | — | — |
| Escherichia coli ECRC98 | 0.87 | JDDGAC_05995 | rssA | patatin-like phospholipase RssA | 0.86 | JDDGAC_21345 | csrD | RNase E specificity factor CsrD | 0.69 | 19 |
| Escherichia coli BL21 | 0.86 | ECD_01210 | | putative patatin-like family phospholipase | 0.86 | ECD_03111 | | targeting factor for csrBC sRNA degradation | low | > 61 |
| Escherichia coli Nissle 1917 | 0.86 | ECOLIN_RS07470 | | patatin-like phospholipase RssA | 0.86 | ECOLIN_RS18635 | | RNase E specificity factor CsrD | low | > 55 |
| Escherichia coli ECRC62 | 0.86 | BNILDI_18625 | rssA | patatin-like phospholipase RssA | 0.86 | BNILDI_02015 | csrD | RNase E specificity factor CsrD | low | > 75 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.86 | OHPLBJKB_02451 | | putative NTE family protein | 0.86 | OHPLBJKB_00453 | | RNase E specificity factor CsrD | low | > 73 |
| Escherichia coli BW25113 | 0.86 | b1234 | rssA | conserved protein (RefSeq) | 0.86 | b3252 | yhdA | conserved inner membrane protein (NCBI) | 0.34 | 36 |
| Klebsiella michiganensis M5al | 0.81 | BWI76_RS17280 | | patatin family protein | 0.78 | BWI76_RS25505 | | RNase E specificity factor CsrD | low | > 92 |
| Enterobacter sp. TBS_079 | 0.80 | MPMX20_02594 | | putative NTE family protein | 0.80 | MPMX20_04158 | | RNase E specificity factor CsrD | low | > 85 |
| Enterobacter asburiae PDN3 | 0.79 | EX28DRAFT_0860 | | Predicted esterase of the alpha-beta hydrolase superfamily | 0.80 | EX28DRAFT_3302 | | diguanylate cyclase (GGDEF) domain | low | > 76 |
| Pantoea sp. MT58 | 0.73 | IAI47_09020 | | patatin-like phospholipase RssA | 0.50 | IAI47_02430 | | RNase E specificity factor CsrD | low | > 76 |
| Rahnella sp. WP5 | 0.73 | EX31_RS10105 | | patatin-like phospholipase RssA | 0.49 | EX31_RS12230 | | RNase E specificity factor CsrD | low | > 89 |
| Serratia liquefaciens MT49 | 0.71 | IAI46_14255 | | patatin-like phospholipase RssA | 0.56 | IAI46_22725 | | RNase E specificity factor CsrD | low | > 86 |
| Dickeya dadantii 3937 | 0.67 | DDA3937_RS10335 | | patatin-like phospholipase RssA | 0.51 | DDA3937_RS01425 | | RNase E specificity factor CsrD | low | > 74 |
| Dickeya dianthicola ME23 | 0.67 | DZA65_RS10820 | | patatin-like phospholipase RssA | 0.51 | DZA65_RS01405 | | RNase E specificity factor CsrD | low | > 75 |
| Dickeya dianthicola 67-19 | 0.66 | HGI48_RS10345 | | patatin-like phospholipase RssA | 0.51 | HGI48_RS01345 | | RNase E specificity factor CsrD | low | > 71 |
| Pectobacterium carotovorum WPP14 | 0.65 | HER17_RS11055 | | patatin-like phospholipase RssA | 0.52 | HER17_RS20175 | | RNase E specificity factor CsrD | low | > 75 |
| Shewanella amazonensis SB2B | 0.42 | Sama_1274 | | hypothetical protein (RefSeq) | 0.21 | Sama_0449 | | regulatory protein CsrD (RefSeq) | low | > 62 |
| Shewanella loihica PV-4 | 0.41 | Shew_2451 | | patatin (RefSeq) | 0.20 | Shew_0384 | | regulatory protein CsrD (RefSeq) | low | > 60 |
| Shewanella sp. ANA-3 | 0.40 | Shewana3_2605 | | patatin (RefSeq) | 0.20 | Shewana3_3668 | | regulatory protein CsrD (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.40 | SO2836 | | conserved hypothetical protein (NCBI ptt file) | 0.22 | SO4116 | mshH | MSHA biogenesis protein MshH (NCBI ptt file) | low | > 76 |
| Pseudomonas fluorescens FW300-N1B4 | 0.28 | Pf1N1B4_310 | | UPF0028 protein YchK | 0.11 | Pf1N1B4_1802 | | Membrane bound c-di-GMP receptor LapD | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.27 | Pf6N2E2_2489 | | UPF0028 protein YchK | 0.10 | Pf6N2E2_3983 | | Membrane bound c-di-GMP receptor LapD | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.27 | AO356_03290 | | alpha/beta hydrolase | 0.10 | AO356_10580 | | hypothetical protein | low | > 104 |
| Pseudomonas sp. RS175 | 0.26 | PFR28_00944 | | putative NTE family protein | 0.09 | PFR28_04783 | | hypothetical protein | low | > 88 |
| Pseudomonas fluorescens GW456-L13 | 0.26 | PfGW456L13_2206 | | UPF0028 protein YchK | 0.09 | PfGW456L13_546 | | Membrane bound c-di-GMP receptor LapD | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.26 | AO353_18940 | | alpha/beta hydrolase | 0.10 | AO353_11170 | | hypothetical protein | low | > 101 |