| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 1.0 | GFF1082 | | Putative alanine/glycine transport protein | 1.0 | GFF2133 | | RNase E specificity factor CsrD | 0.96 | 2 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.74 | OHPLBJKB_03653 | | Amino-acid carrier protein AlsT | 0.86 | OHPLBJKB_00453 | | RNase E specificity factor CsrD | 0.61 | 1 |
| Escherichia coli BL21 | 0.74 | ECD_00007 | | putative transporter | 0.86 | ECD_03111 | | targeting factor for csrBC sRNA degradation | 0.79 | 1 |
| Escherichia coli ECOR38 | 0.74 | HEPCGN_09090 | yaaJ | Uncharacterized transporter YaaJ | 0.86 | HEPCGN_16585 | csrD | RNase E specificity factor CsrD | 0.72 | 37 |
| Escherichia coli ECRC101 | 0.74 | MCAODC_01600 | yaaJ | Uncharacterized transporter YaaJ | 0.86 | MCAODC_08240 | csrD | RNase E specificity factor CsrD | 0.76 | 3 |
| Escherichia coli BW25113 | 0.74 | b0007 | yaaJ | predicted transporter (NCBI) | 0.86 | b3252 | yhdA | conserved inner membrane protein (NCBI) | 0.59 | 1 |
| Escherichia coli ECRC99 | 0.74 | KEDOAH_17070 | yaaJ | Uncharacterized transporter YaaJ | 0.86 | KEDOAH_10430 | csrD | RNase E specificity factor CsrD | — | — |
| Escherichia coli ECRC100 | 0.74 | OKFHMN_11085 | yaaJ | Uncharacterized transporter YaaJ | 0.86 | OKFHMN_17720 | csrD | RNase E specificity factor CsrD | 0.91 | 2 |
| Escherichia coli ECRC102 | 0.74 | NIAGMN_08935 | yaaJ | Uncharacterized transporter YaaJ | 0.86 | NIAGMN_15480 | csrD | RNase E specificity factor CsrD | — | — |
| Escherichia coli ECOR27 | 0.74 | NOLOHH_03415 | yaaJ | Uncharacterized transporter YaaJ | 0.86 | NOLOHH_09505 | csrD | RNase E specificity factor CsrD | 0.72 | 2 |
| Escherichia coli ECRC62 | 0.74 | BNILDI_08190 | yaaJ | Uncharacterized transporter YaaJ | 0.86 | BNILDI_02015 | csrD | RNase E specificity factor CsrD | low | > 75 |
| Escherichia coli ECRC98 | 0.74 | JDDGAC_14680 | yaaJ | Uncharacterized transporter YaaJ | 0.86 | JDDGAC_21345 | csrD | RNase E specificity factor CsrD | low | > 86 |
| Escherichia fergusonii Becca | 0.73 | EFB2_04036 | | Amino-acid carrier protein AlsT | 0.86 | EFB2_00579 | | RNase E specificity factor CsrD | low | > 86 |
| Escherichia coli Nissle 1917 | 0.73 | ECOLIN_RS00040 | | sodium:alanine symporter family protein | 0.86 | ECOLIN_RS18635 | | RNase E specificity factor CsrD | low | > 55 |
| Enterobacter asburiae PDN3 | 0.73 | EX28DRAFT_3619 | | amino acid carrier protein | 0.80 | EX28DRAFT_3302 | | diguanylate cyclase (GGDEF) domain | 0.47 | 32 |
| Klebsiella michiganensis M5al | 0.70 | BWI76_RS04265 | | sodium:alanine symporter family protein | 0.78 | BWI76_RS25505 | | RNase E specificity factor CsrD | low | > 92 |
| Enterobacter sp. TBS_079 | 0.70 | MPMX20_00715 | | Amino-acid carrier protein AlsT | 0.80 | MPMX20_04158 | | RNase E specificity factor CsrD | 0.46 | 1 |
| Serratia liquefaciens MT49 | 0.54 | IAI46_03050 | | sodium:alanine symporter family protein | 0.56 | IAI46_22725 | | RNase E specificity factor CsrD | low | > 86 |
| Vibrio cholerae E7946 ATCC 55056 | 0.53 | CSW01_11935 | | sodium:alanine symporter family protein | 0.26 | CSW01_02100 | | RNase E specificity factor CsrD | low | > 62 |
| Shewanella amazonensis SB2B | 0.48 | Sama_0916 | | sodium:alanine symporter family protein (RefSeq) | 0.21 | Sama_0449 | | regulatory protein CsrD (RefSeq) | low | > 62 |
| Shewanella oneidensis MR-1 | 0.47 | SO3541 | | sodium:alanine symporter family protein (NCBI ptt file) | 0.22 | SO4116 | mshH | MSHA biogenesis protein MshH (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.47 | Shewana3_3144 | | amino acid carrier protein (RefSeq) | 0.20 | Shewana3_3668 | | regulatory protein CsrD (RefSeq) | low | > 73 |
| Shewanella loihica PV-4 | 0.42 | Shew_1092 | | amino acid carrier protein (RefSeq) | 0.20 | Shew_0384 | | regulatory protein CsrD (RefSeq) | low | > 60 |
| Rahnella sp. WP5 | 0.41 | EX31_RS03925 | | alanine:cation symporter family protein | 0.49 | EX31_RS12230 | | RNase E specificity factor CsrD | 0.73 | 1 |
| Pseudomonas fluorescens FW300-N1B4 | 0.39 | Pf1N1B4_2024 | | sodium/alanine transporter | 0.11 | Pf1N1B4_1802 | | Membrane bound c-di-GMP receptor LapD | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.39 | Pf6N2E2_4086 | | sodium/alanine transporter | 0.10 | Pf6N2E2_3983 | | Membrane bound c-di-GMP receptor LapD | 0.35 | 7 |
| Pseudomonas fluorescens FW300-N2C3 | 0.39 | AO356_11095 | | sodium:alanine symporter | 0.10 | AO356_10580 | | hypothetical protein | low | > 104 |
| Pseudomonas sp. RS175 | 0.39 | PFR28_04500 | | Amino-acid carrier protein AlsT | 0.09 | PFR28_04783 | | hypothetical protein | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.38 | AO353_09955 | | sodium:alanine symporter | 0.10 | AO353_11170 | | hypothetical protein | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.38 | PfGW456L13_741 | | sodium/alanine transporter | 0.09 | PfGW456L13_546 | | Membrane bound c-di-GMP receptor LapD | low | > 87 |