Conservation of cofitness between Psest_2811 and Psest_1455 in Pseudomonas stutzeri RCH2

34 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_2811 Uncharacterized conserved protein 1.0 Psest_1455 diguanylate cyclase (GGDEF) domain 0.34 14
Pseudomonas fluorescens FW300-N2E2 0.76 Pf6N2E2_3041 tRNA pseudouridine 13 synthase (EC 4.2.1.-) 0.37 Pf6N2E2_139 Two-component response regulator low > 103
Pseudomonas fluorescens FW300-N1B4 0.75 Pf1N1B4_3111 tRNA pseudouridine 13 synthase (EC 4.2.1.-) 0.39 Pf1N1B4_5860 Two-component response regulator low > 87
Pseudomonas fluorescens FW300-N2C3 0.75 AO356_05905 pseudouridine synthase 0.38 AO356_01080 histidine kinase low > 104
Pseudomonas fluorescens FW300-N2E3 0.74 AO353_16595 pseudouridine synthase 0.42 AO353_21315 histidine kinase low > 101
Pseudomonas simiae WCS417 0.74 PS417_06345 pseudouridine synthase 0.46 PS417_21835 histidine kinase low > 88
Pseudomonas fluorescens SBW25-INTG 0.74 PFLU_RS06410 tRNA pseudouridine(13) synthase TruD 0.46 PFLU_RS23435 diguanylate cyclase low > 109
Pseudomonas fluorescens SBW25 0.74 PFLU_RS06410 tRNA pseudouridine(13) synthase TruD 0.46 PFLU_RS23435 diguanylate cyclase low > 109
Pseudomonas putida KT2440 0.74 PP_1619 tRNA pseudouridine synthase D 0.43 PP_1155 YaiC/YhcK/ArdA family protein low > 96
Pseudomonas sp. S08-1 0.73 OH686_18165 tRNA pseudouridine(13) synthase 0.48 OH686_04700 hypothetical protein low > 80
Pseudomonas syringae pv. syringae B728a 0.71 Psyr_1370 tRNA pseudouridine synthase D, TruD 0.39 Psyr_3763 GGDEF domain protein low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.71 Psyr_1370 tRNA pseudouridine synthase D, TruD 0.39 Psyr_3763 GGDEF domain protein low > 86
Dyella japonica UNC79MFTsu3.2 0.38 ABZR86_RS06605 tRNA pseudouridine(13) synthase TruD 0.31 ABZR86_RS19325 diguanylate cyclase low > 74
Rahnella sp. WP5 0.31 EX31_RS07845 tRNA pseudouridine(13) synthase TruD 0.20 EX31_RS22990 diguanylate cyclase low > 89
Dickeya dadantii 3937 0.31 DDA3937_RS16890 tRNA pseudouridine(13) synthase TruD 0.40 DDA3937_RS06830 diguanylate cyclase low > 74
Pectobacterium carotovorum WPP14 0.30 HER17_RS04335 tRNA pseudouridine(13) synthase TruD 0.35 HER17_RS14460 diguanylate cyclase AdrA low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.29 OHPLBJKB_00988 tRNA pseudouridine synthase D 0.35 OHPLBJKB_03289 putative diguanylate cyclase DgcC low > 73
Escherichia coli BW25113 0.29 b2745 truD tRNA pseudouridine synthase D (NCBI) 0.35 b0385 yaiC predicted diguanylate cyclase (NCBI) low > 76
Escherichia coli ECRC62 0.29 BNILDI_10840 truD tRNA pseudouridine(13) synthase TruD 0.35 BNILDI_22955 adrA diguanylate cyclase AdrA — —
Pantoea sp. MT58 0.29 IAI47_04215 tRNA pseudouridine(13) synthase TruD 0.22 IAI47_19665 diguanylate cyclase low > 76
Escherichia coli BL21 0.29 ECD_02595 tRNA(Glu) pseudouridine(13) synthase 0.35 ECD_00332 diguanylate cyclase, cellulose regualtor low > 60
Escherichia coli Nissle 1917 0.29 ECOLIN_RS15350 tRNA pseudouridine(13) synthase TruD 0.35 ECOLIN_RS02340 diguanylate cyclase AdrA low > 52
Escherichia coli ECRC102 0.29 NIAGMN_18245 truD tRNA pseudouridine(13) synthase TruD 0.35 NIAGMN_06670 adrA diguanylate cyclase AdrA — —
Escherichia coli ECRC98 0.29 JDDGAC_24140 truD tRNA pseudouridine(13) synthase TruD 0.35 JDDGAC_12270 adrA diguanylate cyclase AdrA — —
Escherichia coli ECRC101 0.29 OKFHMN_20475 truD tRNA pseudouridine(13) synthase TruD 0.35 OKFHMN_08615 adrA diguanylate cyclase AdrA — —
Escherichia coli ECRC99 0.29 KEDOAH_07665 truD tRNA pseudouridine(13) synthase TruD 0.35 KEDOAH_19350 adrA diguanylate cyclase AdrA — —
Escherichia fergusonii Becca 0.29 EFB2_01165 tRNA pseudouridine synthase D 0.35 EFB2_03671 putative diguanylate cyclase DgcC low > 86
Escherichia coli ECOR27 0.29 NOLOHH_12290 truD tRNA pseudouridine(13) synthase TruD 0.35 NOLOHH_01540 adrA diguanylate cyclase AdrA low > 57
Escherichia coli ECRC101 0.29 MCAODC_11000 truD tRNA pseudouridine(13) synthase TruD 0.35 MCAODC_27840 adrA diguanylate cyclase AdrA — —
Escherichia coli ECOR38 0.29 HEPCGN_19655 truD tRNA pseudouridine(13) synthase TruD 0.35 HEPCGN_07255 adrA diguanylate cyclase AdrA low > 85
Serratia liquefaciens MT49 0.29 IAI46_03765 tRNA pseudouridine(13) synthase TruD 0.40 IAI46_05890 diguanylate cyclase low > 86
Enterobacter sp. TBS_079 0.29 MPMX20_03631 tRNA pseudouridine synthase D 0.31 MPMX20_00975 putative diguanylate cyclase DgcC low > 85
Enterobacter asburiae PDN3 0.29 EX28DRAFT_2841 tRNA pseudouridine synthase, TruD family 0.30 EX28DRAFT_2586 diguanylate cyclase (GGDEF) domain low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.29 GFF4793 tRNA pseudouridine 13 synthase (EC 4.2.1.-) 0.32 GFF4282 Protein YaiC low > 78
Klebsiella michiganensis M5al 0.28 BWI76_RS22665 tRNA pseudouridine(13) synthase TruD 0.22 BWI76_RS21800 MASE2 domain/diguanylate cyclase low > 92

Not shown: 20 genomes with orthologs for Psest_2811 only; 4 genomes with orthologs for Psest_1455 only