Conservation of cofitness between EX31_RS15065 and EX31_RS14140 in Rahnella sp. WP5

40 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rahnella sp. WP5 1.0 EX31_RS15065 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) 1.0 EX31_RS14140 tRNA (uridine(54)-C5)-methyltransferase TrmA 0.61 7
Serratia liquefaciens MT49 0.79 IAI46_00600 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) 0.85 IAI46_24455 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 86
Erwinia tracheiphila SCR3 0.77 LU632_RS24240 wecB UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) 0.74 LU632_RS19550 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 74
Klebsiella michiganensis M5al 0.76 BWI76_RS01090 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) 0.77 BWI76_RS00885 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 92
Pectobacterium carotovorum WPP14 0.75 HER17_RS01155 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) 0.80 HER17_RS00975 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 75
Enterobacter asburiae PDN3 0.75 EX28DRAFT_4456 UDP-N-acetylglucosamine 2-epimerase 0.78 EX28DRAFT_4428 tRNA (uracil(54)-C(5))-methyltransferase low > 76
Escherichia coli BW25113 0.75 b3786 rffE UDP-N-acetyl glucosamine-2-epimerase (NCBI) 0.78 b3965 trmA tRNA (uracil-5-)-methyltransferase (NCBI) low > 76
Escherichia fergusonii Becca 0.75 EFB2_04853 UDP-N-acetylglucosamine 2-epimerase 0.77 EFB2_04645 tRNA/tmRNA (uracil-C(5))-methyltransferase low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.75 OHPLBJKB_04268 UDP-N-acetylglucosamine 2-epimerase 0.78 OHPLBJKB_04085 tRNA/tmRNA (uracil-C(5))-methyltransferase low > 73
Escherichia coli BL21 0.75 ECD_03664 UDP-N-acetyl glucosamine-2-epimerase 0.78 ECD_03850 tRNA m(5)U54 methyltransferase, SAM-dependent; tmRNA m(5)U341 methyltransferase 0.70 4
Escherichia coli Nissle 1917 0.75 ECOLIN_RS21735 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) 0.77 ECOLIN_RS22900 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 55
Pantoea sp. MT58 0.75 IAI47_18510 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) 0.80 IAI47_00950 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 76
Escherichia coli ECRC100 0.75 OKFHMN_14570 wecB UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) 0.78 OKFHMN_13535 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 80
Escherichia coli ECRC99 0.75 KEDOAH_13580 wecB UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) 0.78 KEDOAH_14625 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA — —
Escherichia coli ECRC102 0.75 NIAGMN_12325 wecB UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) 0.78 NIAGMN_11285 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA — —
Escherichia coli ECRC62 0.75 BNILDI_04820 wecB UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) 0.78 BNILDI_05845 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 75
Escherichia coli ECRC101 0.75 MCAODC_05075 wecB UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) 0.77 MCAODC_04035 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 87
Escherichia coli ECRC98 0.75 JDDGAC_18195 wecB UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) 0.78 JDDGAC_17160 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA 0.87 83
Escherichia coli ECOR27 0.75 NOLOHH_06705 wecB UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) 0.78 NOLOHH_05680 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 75
Escherichia coli ECOR38 0.75 HEPCGN_13280 wecB UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) 0.77 HEPCGN_12190 trmA tRNA (uridine(54)-C5)-methyltransferase TrmA low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.74 GFF2887 UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14) 0.78 GFF2351 tRNA (uracil(54)-C5)-methyltransferase (EC 2.1.1.35) low > 78
Dickeya dadantii 3937 0.73 DDA3937_RS20055 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) 0.82 DDA3937_RS00990 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 74
Enterobacter sp. TBS_079 0.72 MPMX20_04487 UDP-N-acetylglucosamine 2-epimerase 0.78 MPMX20_04515 tRNA/tmRNA (uracil-C(5))-methyltransferase low > 85
Dickeya dianthicola ME23 0.72 DZA65_RS21245 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) 0.80 DZA65_RS21430 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 75
Dickeya dianthicola 67-19 0.72 HGI48_RS20200 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) 0.81 HGI48_RS20385 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 71
Shewanella amazonensis SB2B 0.71 Sama_2261 UDP-N-acetylglucosamine 2-epimerase (RefSeq) 0.60 Sama_0193 tRNA (uracil-5-)-methyltransferase (RefSeq) — —
Vibrio cholerae E7946 ATCC 55056 0.69 CSW01_04705 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) 0.65 CSW01_00785 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 62
Pseudomonas sp. S08-1 0.68 OH686_14385 UDP-N-acetylglucosamine 2-epimerase 0.48 OH686_16060 tRNA (uracil(54)-C(5))-methyltransferase low > 80
Pseudomonas fluorescens GW456-L13 0.67 PfGW456L13_3995 UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14) 0.48 PfGW456L13_1430 tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) low > 87
Pseudomonas sp. RS175 0.66 PFR28_00916 UDP-N-acetylglucosamine 2-epimerase 0.50 PFR28_03809 tRNA/tmRNA (uracil-C(5))-methyltransferase low > 88
Pseudomonas putida KT2440 0.64 PP_1811 UDP-N-acetylglucosamine-2-epimerase 0.49 PP_4654 tRNA/tmRNA (uracil-C(5))-methyltransferase low > 96
Pseudomonas stutzeri RCH2 0.59 Psest_0249 UDP-N-acetylglucosamine 2-epimerase 0.51 Psest_3451 tRNA (uracil-5-)-methyltransferase low > 67
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_201 UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14) 0.49 Pf6N2E2_5063 tRNA (Uracil54-C5-)-methyltransferase (EC 2.1.1.35) low > 103
Pseudomonas syringae pv. syringae B728a 0.53 Psyr_1032 UDP-N-Acetylglucosamine 2-epimerase 0.47 Psyr_4287 tRNA (uracil-5-)-methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.53 Psyr_1032 UDP-N-Acetylglucosamine 2-epimerase 0.47 Psyr_4287 tRNA (uracil-5-)-methyltransferase low > 86
Pseudomonas fluorescens FW300-N2C3 0.53 AO356_00800 UDP-N-acetylglucosamine 2-epimerase 0.49 AO356_15600 tRNA (uracil-5-)-methyltransferase low > 104
Pseudomonas fluorescens FW300-N2E3 0.50 AO353_01990 UDP-N-acetylglucosamine 2-epimerase 0.49 AO353_13905 tRNA (uracil-5-)-methyltransferase low > 101
Acinetobacter radioresistens SK82 0.41 MPMX26_00920 UDP-N-acetylglucosamine 2-epimerase 0.53 MPMX26_01714 tRNA/tmRNA (uracil-C(5))-methyltransferase low > 36
Pseudomonas simiae WCS417 0.14 PS417_08175 UDP-N-acetylglucosamine 2-epimerase 0.48 PS417_24385 tRNA (uracil-5-)-methyltransferase — —
Pseudomonas fluorescens SBW25 0.14 PFLU_RS08155 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) 0.48 PFLU_RS26305 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 109
Pseudomonas fluorescens SBW25-INTG 0.14 PFLU_RS08155 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) 0.48 PFLU_RS26305 tRNA (uridine(54)-C5)-methyltransferase TrmA low > 109

Not shown: 30 genomes with orthologs for EX31_RS15065 only; 6 genomes with orthologs for EX31_RS14140 only