Conservation of cofitness between EX31_RS07960 and EX31_RS12175 in Rahnella sp. WP5

34 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rahnella sp. WP5 1.0 EX31_RS07960 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.0 EX31_RS12175 DNA-binding transcriptional regulator Fis 0.66 9
Serratia liquefaciens MT49 0.72 IAI46_03595 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.99 IAI46_22780 DNA-binding transcriptional regulator Fis — —
Pectobacterium carotovorum WPP14 0.66 HER17_RS04110 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.96 HER17_RS20240 DNA-binding transcriptional regulator Fis low > 75
Dickeya dianthicola 67-19 0.65 HGI48_RS17075 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.97 HGI48_RS01290 DNA-binding transcriptional regulator Fis low > 71
Dickeya dadantii 3937 0.65 DDA3937_RS17020 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.97 DDA3937_RS01370 DNA-binding transcriptional regulator Fis — —
Dickeya dianthicola ME23 0.64 DZA65_RS18150 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.97 DZA65_RS01350 DNA-binding transcriptional regulator Fis low > 75
Enterobacter asburiae PDN3 0.61 EX28DRAFT_2865 23S rRNA (uracil-5-)-methyltransferase RumA 0.99 EX28DRAFT_3314 Factor for inversion stimulation Fis, transcriptional activator low > 76
Enterobacter sp. TBS_079 0.61 MPMX20_03654 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.99 MPMX20_04170 DNA-binding protein Fis low > 85
Pantoea sp. MT58 0.60 IAI47_04115 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.98 IAI47_02380 DNA-binding transcriptional regulator Fis low > 76
Escherichia coli ECOR38 0.60 HEPCGN_19495 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.99 HEPCGN_16500 fis DNA-binding transcriptional regulator Fis low > 87
Escherichia coli Nissle 1917 0.60 ECOLIN_RS15520 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.99 ECOLIN_RS18730 DNA-binding transcriptional regulator Fis low > 55
Escherichia coli BW25113 0.60 b2785 rumA 23S rRNA (uracil-5-)-methyltransferase (NCBI) 0.99 b3261 fis DNA-binding protein Fis (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.60 OHPLBJKB_00946 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.99 OHPLBJKB_00444 DNA-binding protein Fis — —
Escherichia coli ECRC102 0.60 NIAGMN_18015 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.99 NIAGMN_15440 fis DNA-binding transcriptional regulator Fis — —
Escherichia coli ECRC101 0.60 MCAODC_10770 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.99 MCAODC_08200 fis DNA-binding transcriptional regulator Fis low > 87
Escherichia coli ECRC98 0.60 JDDGAC_23910 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.99 JDDGAC_21305 fis DNA-binding transcriptional regulator Fis — —
Escherichia coli ECRC100 0.60 OKFHMN_20245 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.99 OKFHMN_17680 fis DNA-binding transcriptional regulator Fis low > 80
Escherichia coli ECRC99 0.60 KEDOAH_07885 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.99 KEDOAH_10470 fis DNA-binding transcriptional regulator Fis — —
Escherichia coli ECOR27 0.59 NOLOHH_12120 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.99 NOLOHH_09465 fis DNA-binding transcriptional regulator Fis — —
Escherichia coli ECRC62 0.59 BNILDI_10625 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.99 BNILDI_02055 fis DNA-binding transcriptional regulator Fis — —
Escherichia fergusonii Becca 0.59 EFB2_01132 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.99 EFB2_00563 DNA-binding protein Fis low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.59 GFF4838 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.99 GFF2123 DNA-binding protein Fis — —
Escherichia coli BL21 0.59 ECD_02630 23S rRNA m(5)U1939 methyltransferase, SAM-dependent 0.99 ECD_03119 global DNA-binding transcriptional dual regulator low > 61
Klebsiella michiganensis M5al 0.59 BWI76_RS22810 23S rRNA (uracil(1939)-C(5))-methyltransferase 0.99 BWI76_RS25570 Fis family transcriptional regulator — —
Erwinia tracheiphila SCR3 0.55 LU632_RS06345 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.97 LU632_RS21515 fis DNA-binding transcriptional regulator Fis low > 74
Vibrio cholerae E7946 ATCC 55056 0.45 CSW01_12410 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.85 CSW01_01490 Fis family transcriptional regulator low > 62
Shewanella amazonensis SB2B 0.41 Sama_1032 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.61 Sama_3226 fis DNA-binding protein Fis (RefSeq) — —
Shewanella oneidensis MR-1 0.41 SO3456 RNA methyltransferase, TrmA family (NCBI ptt file) 0.63 SO0393 fis DNA-binding protein Fis (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.41 Shewana3_1110 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.63 Shewana3_0398 fis DNA-binding protein Fis (RefSeq) — —
Shewanella loihica PV-4 0.40 Shew_1201 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.60 Shew_0329 Fis family transcriptional regulator (RefSeq) — —
Marinobacter adhaerens HP15 0.34 HP15_790 23S rRNA 5-methyluridine methyltransferase 0.54 HP15_3226 fis-like DNA-binding protein — —
Dyella japonica UNC79MFTsu3.2 0.34 ABZR86_RS07120 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.34 ABZR86_RS17055 helix-turn-helix domain-containing protein — —
Pseudomonas sp. S08-1 0.32 OH686_18955 23S rRNA (uracil-5-)-methyltransferase RumA 0.51 OH686_07615 DNA-binding protein Fis — —
Xanthomonas campestris pv. campestris strain 8004 0.31 Xcc-8004.3669.1 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.45 Xcc-8004.671.1 DNA-binding protein Fis — —
Alteromonas macleodii MIT1002 0.30 MIT1002_00793 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.60 MIT1002_03958 Hin recombinational enhancer-binding protein — —

Not shown: 62 genomes with orthologs for EX31_RS07960 only; 0 genomes with orthologs for EX31_RS12175 only