Conservation of cofitness between EX28DRAFT_2079 and EX28DRAFT_2183 in Enterobacter asburiae PDN3

32 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Enterobacter asburiae PDN3 1.0 EX28DRAFT_2079 type II secretion system protein D 1.0 EX28DRAFT_2183 Predicted SAM-dependent methyltransferase 0.57 17
Enterobacter sp. TBS_079 0.87 MPMX20_01515 Putative secretin GspD 0.92 MPMX20_01436 Ribosomal RNA large subunit methyltransferase F low > 85
Rahnella sp. WP5 0.60 EX31_RS16165 type II secretion system secretin GspD 0.50 EX31_RS18995 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF low > 89
Escherichia coli BW25113 0.54 b3325 yheF putative general protein secretion protein (VIMSS) 0.78 b0807 ybiN orf, hypothetical protein (VIMSS) low > 76
Escherichia coli Nissle 1917 0.54 ECOLIN_RS19060 type II secretion system secretin GspD 0.78 ECOLIN_RS04295 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF low > 55
Escherichia coli HS(pFamp)R (ATCC 700891) 0.54 OHPLBJKB_00378 Putative type II secretion system protein D 0.78 OHPLBJKB_02906 Ribosomal RNA large subunit methyltransferase F low > 73
Escherichia fergusonii Becca 0.53 EFB2_00498 Putative secretin GspD 0.78 EFB2_03298 Ribosomal RNA large subunit methyltransferase F low > 86
Klebsiella michiganensis M5al 0.51 BWI76_RS05090 type II secretion system protein GspD 0.75 BWI76_RS08955 23S rRNA (adenine(1618)-N(6))-methyltransferase low > 92
Pectobacterium carotovorum WPP14 0.50 HER17_RS06685 type II secretion system secretin GspD 0.63 HER17_RS17915 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF low > 75
Escherichia coli ECRC102 0.49 NIAGMN_28605 etpD variant type II secretion system secretin EtpD 0.78 NIAGMN_04275 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF — —
Escherichia coli ECRC101 0.49 MCAODC_15265 etpD variant type II secretion system secretin EtpD 0.78 MCAODC_25445 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF low > 87
Escherichia coli ECRC98 0.49 JDDGAC_30295 etpD variant type II secretion system secretin EtpD 0.79 JDDGAC_09865 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF low > 86
Escherichia coli ECRC100 0.49 OKFHMN_00285 etpD variant type II secretion system secretin EtpD 0.78 OKFHMN_06230 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF low > 80
Vibrio cholerae E7946 ATCC 55056 0.41 CSW01_13790 type II secretion system protein GspD 0.51 CSW01_08115 ribosomal RNA large subunit methyltransferase F — —
Alteromonas macleodii MIT1002 0.41 MIT1002_03976 Pullulanase secretion envelope PulD 0.47 MIT1002_02912 Ribosomal RNA large subunit methyltransferase F low > 70
Shewanella sp. ANA-3 0.40 Shewana3_0151 general secretion pathway protein D (RefSeq) 0.47 Shewana3_0127 putative SAM-dependent methyltransferase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.40 SO0166 gspD general secretion pathway protein D (NCBI ptt file) 0.44 SO_0134 putative SAM-dependent methyltransferase (RefSeq) low > 76
Shewanella amazonensis SB2B 0.40 Sama_0169 type II and III secretion system protein (RefSeq) 0.43 Sama_3621 putative SAM-dependent methyltransferase (RefSeq) low > 62
Escherichia coli ECOR27 0.39 NOLOHH_10975 gspD general secretion pathway protein D 0.79 NOLOHH_22580 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF low > 75
Escherichia coli ECOR38 0.39 HEPCGN_18050 gspD general secretion pathway protein D 0.78 HEPCGN_01810 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF low > 87
Escherichia coli BL21 0.39 ECD_02838 putative type II secretion protein GspD 0.78 ECD_00774 23S rRNA m(6)A1618 methyltransferase, SAM-dependent low > 61
Erwinia tracheiphila SCR3 0.34 LU632_RS25230 gspD type II secretion system secretin GspD 0.64 LU632_RS09435 rlmF 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF low > 74
Pseudomonas sp. S08-1 0.28 OH686_11840 type II secretion system protein D 0.53 OH686_17875 23S rRNA (adenine(1618)-N(6))-methyltransferase low > 80
Pseudomonas stutzeri RCH2 0.23 Psest_2577 general secretion pathway protein D 0.54 Psest_1227 Predicted SAM-dependent methyltransferase low > 67
Pseudomonas fluorescens FW300-N2E2 0.21 Pf6N2E2_651 General secretion pathway protein D 0.54 Pf6N2E2_5416 Ribosomal RNA large subunit methyltransferase F (EC 2.1.1.51) low > 103
Pseudomonas fluorescens FW300-N2C3 0.21 AO356_09345 type II secretion system protein GspD 0.54 AO356_17450 23S rRNA methyltransferase low > 104
Pseudomonas fluorescens FW300-N2E3 0.20 AO353_12545 type II secretion system protein GspD 0.53 AO353_04555 23S rRNA methyltransferase low > 101
Pseudomonas fluorescens SBW25 0.20 PFLU_RS11890 type II secretion system secretin GspD 0.50 PFLU_RS05215 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF low > 109
Pseudomonas fluorescens SBW25-INTG 0.20 PFLU_RS11890 type II secretion system secretin GspD 0.50 PFLU_RS05215 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF low > 109
Pseudomonas fluorescens GW456-L13 0.20 PfGW456L13_266 General secretion pathway protein D 0.52 PfGW456L13_1710 Ribosomal RNA large subunit methyltransferase F (EC 2.1.1.51) low > 87
Pseudomonas simiae WCS417 0.19 PS417_11295 general secretion pathway protein GspD 0.50 PS417_05145 23S rRNA methyltransferase low > 88
Pseudomonas putida KT2440 0.16 PP_1046 Type II secretion pathway protein XcpQ 0.53 PP_0976 Ribosomal RNA large subunit methyltransferase F low > 96
Pseudomonas sp. RS175 0.15 PFR28_01750 Secretin XcpQ 0.53 PFR28_03532 Ribosomal RNA large subunit methyltransferase F low > 88

Not shown: 21 genomes with orthologs for EX28DRAFT_2079 only; 14 genomes with orthologs for EX28DRAFT_2183 only