Conservation of cofitness between ECD_02518 and ECD_02838 in Escherichia coli BL21

29 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_02518 4-aminobutyrate aminotransferase, PLP-dependent 1.0 ECD_02838 putative type II secretion protein GspD 0.55 31
Escherichia coli ECRC102 0.99 NIAGMN_18675 gabT 4-aminobutyrate--2-oxoglutarate transaminase 0.37 NIAGMN_28605 etpD variant type II secretion system secretin EtpD — —
Escherichia coli ECRC101 0.99 MCAODC_11430 gabT 4-aminobutyrate--2-oxoglutarate transaminase 0.37 MCAODC_15265 etpD variant type II secretion system secretin EtpD low > 87
Escherichia coli ECRC100 0.99 OKFHMN_20910 gabT 4-aminobutyrate--2-oxoglutarate transaminase 0.37 OKFHMN_00285 etpD variant type II secretion system secretin EtpD low > 80
Escherichia coli ECRC98 0.99 JDDGAC_24570 gabT 4-aminobutyrate--2-oxoglutarate transaminase 0.37 JDDGAC_30295 etpD variant type II secretion system secretin EtpD low > 86
Escherichia coli BW25113 0.99 b2662 gabT 4-aminobutyrate aminotransferase (NCBI) 0.38 b3325 yheF putative general protein secretion protein (VIMSS) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_01070 4-aminobutyrate aminotransferase GabT 1.00 OHPLBJKB_00739 Type II secretion system protein D low > 73
Escherichia coli Nissle 1917 0.99 ECOLIN_RS14845 4-aminobutyrate--2-oxoglutarate transaminase 1.00 ECOLIN_RS17085 type II secretion system secretin GspD low > 55
Escherichia fergusonii Becca 0.99 EFB2_01268 4-aminobutyrate aminotransferase GabT 0.99 EFB2_00845 Secretin GspD 2 low > 86
Escherichia coli ECOR27 0.99 NOLOHH_12735 gabT 4-aminobutyrate--2-oxoglutarate transaminase 1.00 NOLOHH_10975 gspD general secretion pathway protein D low > 75
Escherichia coli ECOR38 0.98 HEPCGN_20155 gabT 4-aminobutyrate--2-oxoglutarate transaminase 1.00 HEPCGN_18050 gspD general secretion pathway protein D low > 87
Pseudomonas sp. S08-1 0.77 OH686_11880 4-aminobutyrate transaminase 0.26 OH686_11840 type II secretion system protein D low > 80
Pseudomonas stutzeri RCH2 0.76 Psest_3653 4-aminobutyrate aminotransferase, prokaryotic type 0.23 Psest_2577 general secretion pathway protein D low > 67
Pseudomonas sp. RS175 0.74 PFR28_04756 5-aminovalerate aminotransferase DavT 0.15 PFR28_01750 Secretin XcpQ low > 88
Pseudomonas fluorescens SBW25-INTG 0.73 PFLU_RS00915 4-aminobutyrate--2-oxoglutarate transaminase 0.20 PFLU_RS11890 type II secretion system secretin GspD low > 109
Pseudomonas fluorescens FW300-N2E2 0.73 Pf6N2E2_4013 5-aminovalerate transaminase (EC 2.6.1.48) (from data) 0.21 Pf6N2E2_651 General secretion pathway protein D low > 103
Pseudomonas fluorescens SBW25 0.73 PFLU_RS00915 4-aminobutyrate--2-oxoglutarate transaminase 0.20 PFLU_RS11890 type II secretion system secretin GspD low > 109
Pseudomonas fluorescens FW300-N2C3 0.73 AO356_10715 4-aminobutyrate aminotransferase 0.20 AO356_09345 type II secretion system protein GspD low > 104
Pseudomonas fluorescens GW456-L13 0.73 PfGW456L13_494 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) 0.20 PfGW456L13_266 General secretion pathway protein D low > 87
Pseudomonas fluorescens FW300-N2E3 0.73 AO353_11510 5-aminovalerate transaminase (EC 2.6.1.48) (from data) 0.19 AO353_12545 type II secretion system protein GspD low > 101
Pseudomonas simiae WCS417 0.73 PS417_00900 4-aminobutyrate aminotransferase 0.19 PS417_11295 general secretion pathway protein GspD low > 88
Pseudomonas syringae pv. syringae B728a 0.72 Psyr_0090 4-aminobutyrate aminotransferase apoenzyme 0.08 Psyr_3141 type II and III secretion system protein:NolW-like protein low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.72 Psyr_0090 4-aminobutyrate aminotransferase apoenzyme 0.08 Psyr_3141 type II and III secretion system protein:NolW-like protein low > 86
Shewanella amazonensis SB2B 0.67 Sama_2636 gamma-aminobutyrate transaminase (EC 2.6.1.19) (from data) 0.46 Sama_0169 type II and III secretion system protein (RefSeq) low > 62
Shewanella sp. ANA-3 0.66 Shewana3_3091 4-aminobutyrate aminotransferase (RefSeq) 0.48 Shewana3_0151 general secretion pathway protein D (RefSeq) low > 73
Shewanella oneidensis MR-1 0.66 SO1276 gabT 4-aminobutyrate aminotransferase (NCBI ptt file) 0.48 SO0166 gspD general secretion pathway protein D (NCBI ptt file) low > 76
Variovorax sp. OAS795 0.64 ABID97_RS21585 4-aminobutyrate--2-oxoglutarate transaminase 0.18 ABID97_RS06950 type II secretion system secretin GspD low > 91
Acidovorax sp. GW101-3H11 0.62 Ac3H11_4179 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) 0.15 Ac3H11_2030 General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD) low > 79
Shewanella loihica PV-4 0.51 Shew_3172 4-aminobutyrate aminotransferase (RefSeq) 0.45 Shew_3619 general secretion pathway protein D (RefSeq) low > 60
Marinobacter adhaerens HP15 0.50 HP15_3708 4-aminobutyrate aminotransferase 0.23 HP15_2355 type II and III secretion system protein low > 73

Not shown: 7 genomes with orthologs for ECD_02518 only; 27 genomes with orthologs for ECD_02838 only