Conservation of cofitness between ECD_00652 and ECD_02591 in Escherichia coli BL21

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_00652 fused sensory histidine kinase in two-component regulatory system with KdpE: signal sensing protein 1.0 ECD_02591 RNA polymerase, sigma S (sigma 38) factor 0.45 46
Escherichia coli ECRC98 1.00 JDDGAC_10725 kdpD two-component system sensor histidine kinase KdpD 1.00 JDDGAC_24160 rpoS RNA polymerase sigma factor RpoS low > 86
Escherichia coli ECRC100 1.00 OKFHMN_07075 kdpD two-component system sensor histidine kinase KdpD 0.92 OKFHMN_20495 rpoS RNA polymerase sigma factor RpoS low > 80
Escherichia coli ECRC101 1.00 MCAODC_26290 kdpD two-component system sensor histidine kinase KdpD 1.00 MCAODC_11020 rpoS RNA polymerase sigma factor RpoS low > 87
Escherichia coli ECRC102 1.00 NIAGMN_05130 kdpD two-component system sensor histidine kinase KdpD 1.00 NIAGMN_18265 rpoS RNA polymerase sigma factor RpoS
Escherichia coli ECOR38 1.00 HEPCGN_01160 kdpD two-component system sensor histidine kinase KdpD 1.00 HEPCGN_19675 rpoS RNA polymerase sigma factor RpoS low > 87
Escherichia coli BW25113 1.00 b0695 kdpD fused sensory histidine kinase in two-component regulatory system with KdpE: signal sensing protein (NCBI) 1.00 b2741 rpoS RNA polymerase sigma factor (NCBI) 0.17 53
Escherichia coli ECOR27 1.00 NOLOHH_23455 kdpD two-component system sensor histidine kinase KdpD 1.00 NOLOHH_12310 rpoS RNA polymerase sigma factor RpoS low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_03022 Sensor protein KdpD 1.00 OHPLBJKB_00992 RNA polymerase sigma factor RpoS low > 73
Escherichia coli ECRC62 1.00 BNILDI_21460 kdpD two-component system sensor histidine kinase KdpD 1.00 BNILDI_10860 rpoS RNA polymerase sigma factor RpoS low > 75
Escherichia fergusonii Becca 0.99 EFB2_03401 Sensor protein KdpD 1.00 EFB2_01169 RNA polymerase sigma factor RpoS low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.88 GFF4607 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) 0.99 GFF4788 RNA polymerase sigma factor RpoS low > 78
Enterobacter asburiae PDN3 0.83 EX28DRAFT_2283 Osmosensitive K+ channel histidine kinase 0.99 EX28DRAFT_2837 RNA polymerase, sigma 38 subunit, RpoS low > 76
Enterobacter sp. TBS_079 0.83 MPMX20_01338 Sensor protein KdpD 0.99 MPMX20_03627 RNA polymerase sigma factor RpoS low > 85
Klebsiella michiganensis M5al 0.83 BWI76_RS08305 two-component sensor histidine kinase 0.99 BWI76_RS22645 RNA polymerase sigma factor RpoS low > 92
Rahnella sp. WP5 0.68 EX31_RS23335 two-component system sensor histidine kinase KdbD 0.92 EX31_RS07825 RNA polymerase sigma factor RpoS low > 89
Serratia liquefaciens MT49 0.68 IAI46_06165 two-component system sensor histidine kinase KdbD 0.95 IAI46_03790 RNA polymerase sigma factor RpoS low > 86
Pectobacterium carotovorum WPP14 0.66 HER17_RS15045 two-component system sensor histidine kinase KdpD 0.92 HER17_RS04350 RNA polymerase sigma factor RpoS low > 75
Pantoea sp. MT58 0.66 IAI47_01250 two-component system sensor histidine kinase KdbD 0.95 IAI47_04235 RNA polymerase sigma factor RpoS low > 76
Erwinia tracheiphila SCR3 0.66 LU632_RS00800 kdpD two-component system sensor histidine kinase KdpD 0.94 LU632_RS06480 rpoS RNA polymerase sigma factor RpoS low > 74
Dickeya dadantii 3937 0.65 DDA3937_RS06370 two-component system sensor histidine kinase KdpD 0.93 DDA3937_RS16875 RNA polymerase sigma factor RpoS
Dickeya dianthicola 67-19 0.65 HGI48_RS06415 two-component system sensor histidine kinase KdpD 0.93 HGI48_RS16945 RNA polymerase sigma factor RpoS low > 71
Dickeya dianthicola ME23 0.65 DZA65_RS06760 two-component system sensor histidine kinase KdbD 0.94 DZA65_RS18020 RNA polymerase sigma factor RpoS low > 75
Pseudomonas fluorescens FW300-N2E3 0.50 AO353_28955 sensor protein KdpD 0.64 AO353_16615 RNA polymerase sigma factor RpoS low > 101
Dechlorosoma suillum PS 0.45 Dsui_0272 osmosensitive K+ channel histidine kinase 0.46 Dsui_1971 RNA polymerase sigma factor RpoS low > 51
Paraburkholderia sabiae LMG 24235 0.43 QEN71_RS24345 DUF4118 domain-containing protein 0.38 QEN71_RS22240 RNA polymerase sigma factor RpoS 0.32 82
Paraburkholderia bryophila 376MFSha3.1 0.42 H281DRAFT_04532 two-component system, OmpR family, sensor histidine kinase KdpD 0.38 H281DRAFT_00844 RNA polymerase, sigma 38 subunit, RpoS
Variovorax sp. SCN45 0.40 GFF3520 Osmosensitive K+ channel histidine kinase KdpD 0.34 GFF2842 RNA polymerase sigma factor RpoS low > 127
Herbaspirillum seropedicae SmR1 0.39 HSERO_RS18855 sensor protein KdpD 0.45 HSERO_RS14830 RNA polymerase sigma factor RpoS low > 78
Variovorax sp. OAS795 0.39 ABID97_RS01010 DUF4118 domain-containing protein 0.32 ABID97_RS10730 sigma-70 family RNA polymerase sigma factor low > 91
Pseudomonas fluorescens FW300-N2E2 0.28 Pf6N2E2_2491 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) 0.64 Pf6N2E2_3037 RNA polymerase sigma factor RpoS low > 103
Pseudomonas sp. S08-1 0.27 OH686_01890 Osmosensitive K+ channel histidine kinase KdpD 0.65 OH686_18185 RNA polymerase sigma factor RpoS low > 80
Pseudomonas sp. RS175 0.27 PFR28_00942 Sensor protein KdpD 0.64 PFR28_00427 RNA polymerase sigma factor RpoS low > 88
Pseudomonas fluorescens FW300-N2C3 0.27 AO356_03300 histidine kinase 0.64 AO356_05885 RNA polymerase sigma factor RpoS low > 104
Pseudomonas fluorescens GW456-L13 0.26 PfGW456L13_2204 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) 0.64 PfGW456L13_4674 RNA polymerase sigma factor RpoS low > 87
Pseudomonas syringae pv. syringae B728a 0.26 Psyr_2050 ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Osmosensitive K+ channel His kinase sensor:UspA 0.64 Psyr_1374 RNA polymerase, sigma 38 subunit, RpoS low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.26 Psyr_2050 ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Osmosensitive K+ channel His kinase sensor:UspA 0.64 Psyr_1374 RNA polymerase, sigma 38 subunit, RpoS low > 86
Pseudomonas simiae WCS417 0.26 PS417_08300 histidine kinase 0.64 PS417_06365 RNA polymerase sigma factor low > 88
Pseudomonas fluorescens SBW25 0.26 PFLU_RS08240 sensor histidine kinase KdpD 0.64 PFLU_RS06430 RNA polymerase sigma factor RpoS low > 109
Pseudomonas fluorescens SBW25-INTG 0.26 PFLU_RS08240 sensor histidine kinase KdpD 0.64 PFLU_RS06430 RNA polymerase sigma factor RpoS low > 109
Pseudomonas putida KT2440 0.25 PP_4158 sensor protein 0.64 PP_1623 RNA polymerase, sigma S (sigma 38) factor low > 96
Pseudomonas fluorescens FW300-N1B4 0.25 Pf1N1B4_312 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) 0.64 Pf1N1B4_3115 RNA polymerase sigma factor RpoS low > 87

Not shown: 29 genomes with orthologs for ECD_00652 only; 13 genomes with orthologs for ECD_02591 only