Conservation of cofitness between ECD_00971 and ECD_02519 in Escherichia coli BL21

32 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_00971 23S rRNA m(5)C1962 methyltransferase, SAM-dependent 1.0 ECD_02519 gamma-aminobutyrate transporter 0.61 3
Escherichia coli BW25113 1.00 b0967 yccW predicted methyltransferase (RefSeq) 1.00 b2663 gabP gamma-aminobutyrate transporter (NCBI) low > 76
Escherichia coli Nissle 1917 1.00 ECOLIN_RS05085 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 1.00 ECOLIN_RS14850 GABA permease — —
Escherichia coli ECOR27 0.99 NOLOHH_21740 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 1.00 NOLOHH_12730 gabP GABA permease low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_02699 Ribosomal RNA large subunit methyltransferase I 1.00 OHPLBJKB_01069 GABA permease low > 73
Escherichia coli ECOR38 0.99 HEPCGN_23335 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 1.00 HEPCGN_20160 gabP GABA permease low > 87
Escherichia coli ECRC100 0.98 OKFHMN_05185 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 1.00 OKFHMN_20905 gabP GABA permease low > 80
Escherichia coli ECRC101 0.98 MCAODC_24575 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 1.00 MCAODC_11425 gabP GABA permease low > 87
Escherichia coli ECRC98 0.98 JDDGAC_08795 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 1.00 JDDGAC_24565 gabP GABA permease low > 86
Escherichia coli ECRC62 0.98 BNILDI_19905 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 1.00 BNILDI_11290 gabP GABA permease low > 75
Escherichia coli ECRC99 0.98 KEDOAH_22550 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 1.00 KEDOAH_07235 gabP GABA permease — —
Escherichia coli ECRC102 0.98 NIAGMN_02905 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 1.00 NIAGMN_18670 gabP GABA permease — —
Escherichia fergusonii Becca 0.98 EFB2_03104 Ribosomal RNA large subunit methyltransferase I 1.00 EFB2_01267 GABA permease low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.94 GFF3258 LSU m5C1962 methyltransferase RlmI 0.92 GFF1568 gamma-aminobutyrate (GABA) permease low > 78
Pantoea sp. MT58 0.87 IAI47_12595 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.61 IAI47_19470 GABA permease low > 76
Paraburkholderia sabiae LMG 24235 0.46 QEN71_RS00350 class I SAM-dependent rRNA methyltransferase 0.50 QEN71_RS31450 amino acid permease low > 153
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_02203 SAM-dependent methyltransferase /23S rRNA m(5)C-1962 methyltransferase 0.33 H281DRAFT_01668 gamma-aminobutyrate:proton symporter, AAT family low > 103
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS01650 23S rRNA methyltransferase 0.42 BPHYT_RS21680 amino acid permease-associated protein low > 109
Cupriavidus basilensis FW507-4G11 0.43 RR42_RS01670 23S rRNA methyltransferase 0.41 RR42_RS33780 GABA permease low > 128
Xanthomonas campestris pv. campestris strain 8004 0.31 Xcc-8004.5393.1 LSU m5C1962 methyltransferase RlmI 0.32 Xcc-8004.1650.1 amino acid transporter low > 74
Lysobacter sp. OAE881 0.31 ABIE51_RS00980 class I SAM-dependent rRNA methyltransferase 0.33 ABIE51_RS01430 amino acid permease low > 62
Pseudomonas putida KT2440 0.26 PP_5127 ribosomal RNA large subunit methyltransferase I 0.68 PP_2911 gamma-aminobutyrate permease low > 96
Pseudomonas fluorescens FW300-N1B4 0.26 Pf1N1B4_2307 LSU m5C1962 methyltransferase RlmI 0.62 Pf1N1B4_1639 transport permease protein of gamma-aminobutyrate low > 87
Pseudomonas sp. RS175 0.26 PFR28_04274 Ribosomal RNA large subunit methyltransferase I 0.62 PFR28_04595 GABA permease low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.26 Psyr_4764 SAM-dependent methyltransferase 0.66 Psyr_4909 gamma-aminobutyrate:proton symporter, AAT family low > 86
Pseudomonas fluorescens GW456-L13 0.26 PfGW456L13_977 LSU m5C1962 methyltransferase RlmI 0.64 PfGW456L13_375 transport permease protein of gamma-aminobutyrate low > 87
Pseudomonas syringae pv. syringae B728a 0.26 Psyr_4764 SAM-dependent methyltransferase 0.66 Psyr_4909 gamma-aminobutyrate:proton symporter, AAT family low > 86
Pseudomonas fluorescens SBW25-INTG 0.26 PFLU_RS28525 class I SAM-dependent rRNA methyltransferase 0.65 PFLU_RS01545 GABA permease low > 109
Pseudomonas simiae WCS417 0.26 PS417_26880 SAM-dependent methyltransferase 0.66 PS417_01505 gamma-aminobutyrate transporter low > 88
Pseudomonas fluorescens FW300-N2E2 0.26 Pf6N2E2_4566 LSU m5C1962 methyltransferase RlmI 0.62 Pf6N2E2_4195 transport permease protein of gamma-aminobutyrate low > 103
Pseudomonas fluorescens SBW25 0.26 PFLU_RS28525 class I SAM-dependent rRNA methyltransferase 0.65 PFLU_RS01545 GABA permease low > 109
Pseudomonas fluorescens FW300-N2E3 0.26 AO353_08330 SAM-dependent methyltransferase 0.64 AO353_12005 GABA permease low > 101
Pseudomonas fluorescens FW300-N2C3 0.26 AO356_13260 SAM-dependent methyltransferase 0.62 AO356_11625 GABA permease low > 104

Not shown: 49 genomes with orthologs for ECD_00971 only; 2 genomes with orthologs for ECD_02519 only