Conservation of cofitness between ECD_00332 and ECD_02289 in Escherichia coli BL21

35 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_00332 diguanylate cyclase, cellulose regualtor 1.0 ECD_02289 glutamate-pyruvate aminotransferase; glutamic-pyruvic transaminase (GPT); alanine transaminase 0.33 34
Escherichia coli ECOR38 1.00 HEPCGN_07255 adrA diguanylate cyclase AdrA 1.00 HEPCGN_21580 alaC alanine transaminase low > 87
Escherichia coli BW25113 1.00 b0385 yaiC predicted diguanylate cyclase (NCBI) 1.00 b2379 yfdZ hypothetical protein (NCBI) low > 76
Escherichia coli Nissle 1917 1.00 ECOLIN_RS02340 diguanylate cyclase AdrA 1.00 ECOLIN_RS13690 alanine transaminase low > 55
Escherichia coli ECRC100 1.00 OKFHMN_08615 adrA diguanylate cyclase AdrA 1.00 OKFHMN_22370 alaC alanine transaminase low > 80
Escherichia coli ECRC101 1.00 MCAODC_27840 adrA diguanylate cyclase AdrA 1.00 MCAODC_12900 alaC alanine transaminase low > 87
Escherichia coli ECRC102 1.00 NIAGMN_06670 adrA diguanylate cyclase AdrA 1.00 NIAGMN_20145 alaC alanine transaminase — —
Escherichia coli ECRC98 1.00 JDDGAC_12270 adrA diguanylate cyclase AdrA 1.00 JDDGAC_26335 alaC alanine transaminase low > 86
Escherichia coli ECRC99 1.00 KEDOAH_19350 adrA diguanylate cyclase AdrA 1.00 KEDOAH_05850 alaC alanine transaminase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_03289 putative diguanylate cyclase DgcC 1.00 OHPLBJKB_01342 Glutamate-pyruvate aminotransferase AlaC low > 73
Escherichia coli ECOR27 1.00 NOLOHH_01540 adrA diguanylate cyclase AdrA 1.00 NOLOHH_14055 alaC alanine transaminase low > 75
Escherichia coli ECRC62 0.99 BNILDI_22955 adrA diguanylate cyclase AdrA 1.00 BNILDI_12910 alaC alanine transaminase low > 75
Escherichia fergusonii Becca 0.99 EFB2_03671 putative diguanylate cyclase DgcC 1.00 EFB2_01495 Glutamate-pyruvate aminotransferase AlaC low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.77 GFF4282 Protein YaiC 0.96 GFF1970 Uncharacterized PLP-dependent aminotransferase YfdZ low > 78
Enterobacter asburiae PDN3 0.62 EX28DRAFT_2586 diguanylate cyclase (GGDEF) domain 0.94 EX28DRAFT_0240 Aspartate/tyrosine/aromatic aminotransferase low > 76
Enterobacter sp. TBS_079 0.61 MPMX20_00975 putative diguanylate cyclase DgcC 0.94 MPMX20_03277 Glutamate-pyruvate aminotransferase AlaC low > 85
Pectobacterium carotovorum WPP14 0.46 HER17_RS14460 diguanylate cyclase AdrA 0.91 HER17_RS06655 alanine transaminase low > 75
Serratia liquefaciens MT49 0.42 IAI46_05890 diguanylate cyclase 0.90 IAI46_18180 alanine transaminase low > 86
Dickeya dadantii 3937 0.41 DDA3937_RS06830 diguanylate cyclase 0.89 DDA3937_RS14825 alanine transaminase low > 74
Pseudomonas putida KT2440 0.35 PP_1155 YaiC/YhcK/ArdA family protein 0.87 PP_0817 aminotransferase low > 96
Pseudomonas sp. S08-1 0.35 OH686_04700 hypothetical protein 0.89 OH686_04000 Glutamate-pyruvate aminotransferase AlaC low > 80
Pseudomonas fluorescens SBW25 0.34 PFLU_RS23435 diguanylate cyclase 0.87 PFLU_RS23580 alanine transaminase low > 109
Pseudomonas fluorescens SBW25-INTG 0.34 PFLU_RS23435 diguanylate cyclase 0.87 PFLU_RS23580 alanine transaminase low > 109
Pseudomonas simiae WCS417 0.34 PS417_21835 histidine kinase 0.87 PS417_21975 glutamate-pyruvate aminotransferase low > 88
Pseudomonas stutzeri RCH2 0.34 Psest_1455 diguanylate cyclase (GGDEF) domain 0.16 Psest_1470 succinyldiaminopimelate transaminase low > 67
Pseudomonas fluorescens FW300-N2E3 0.32 AO353_21315 histidine kinase 0.86 AO353_03235 glutamate-pyruvate aminotransferase low > 101
Pseudomonas syringae pv. syringae B728a 0.30 Psyr_3763 GGDEF domain protein 0.86 Psyr_0468 Aminotransferase, class I and II low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.30 Psyr_3763 GGDEF domain protein 0.86 Psyr_0468 Aminotransferase, class I and II low > 86
Paraburkholderia sabiae LMG 24235 0.30 QEN71_RS14650 diguanylate cyclase 0.16 QEN71_RS03275 pyridoxal phosphate-dependent aminotransferase — —
Pseudomonas fluorescens FW300-N2C3 0.29 AO356_01080 histidine kinase 0.87 AO356_05050 glutamate-pyruvate aminotransferase low > 104
Cupriavidus basilensis FW507-4G11 0.29 RR42_RS21525 hypothetical protein 0.81 RR42_RS28540 glutamate--pyruvate aminotransferase low > 128
Herbaspirillum seropedicae SmR1 0.27 HSERO_RS16875 diguanylate cyclase 0.80 HSERO_RS12800 aspartate aminotransferase low > 78
Acidovorax sp. GW101-3H11 0.25 Ac3H11_3069 Response regulator containing a CheY-like receiver domain and a GGDEF domain 0.82 Ac3H11_3720 Uncharacterized PLP-dependent aminotransferase YfdZ low > 79
Pantoea sp. MT58 0.24 IAI47_19665 diguanylate cyclase 0.91 IAI47_05575 alanine transaminase low > 76
Klebsiella michiganensis M5al 0.22 BWI76_RS21800 MASE2 domain/diguanylate cyclase 0.96 BWI76_RS20495 alanine transaminase low > 92
Rahnella sp. WP5 0.20 EX31_RS22990 diguanylate cyclase 0.88 EX31_RS20015 alanine transaminase low > 89

Not shown: 1 genomes with orthologs for ECD_00332 only; 41 genomes with orthologs for ECD_02289 only