Conservation of cofitness between ECD_02630 and ECD_02085 in Escherichia coli BL21

38 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_02630 23S rRNA m(5)U1939 methyltransferase, SAM-dependent 1.0 ECD_02085 lysine transporter 0.53 15
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00946 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 OHPLBJKB_01555 Lysine-specific permease low > 73
Escherichia coli BW25113 1.00 b2785 rumA 23S rRNA (uracil-5-)-methyltransferase (NCBI) 1.00 b2156 lysP lysine transporter (NCBI) low > 76
Escherichia coli ECRC62 0.99 BNILDI_10625 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 BNILDI_13995 lysP lysine-specific permease 0.79 48
Escherichia coli ECOR27 0.99 NOLOHH_12120 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 NOLOHH_15075 lysP lysine-specific permease low > 75
Escherichia coli Nissle 1917 0.99 ECOLIN_RS15520 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 ECOLIN_RS12625 lysine-specific permease low > 55
Escherichia coli ECRC98 0.99 JDDGAC_23910 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 JDDGAC_27460 lysP lysine-specific permease low > 86
Escherichia coli ECRC100 0.99 OKFHMN_20245 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 OKFHMN_23500 lysP lysine-specific permease low > 80
Escherichia coli ECRC101 0.99 MCAODC_10770 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 MCAODC_14550 lysP lysine-specific permease low > 87
Escherichia coli ECRC99 0.99 KEDOAH_07885 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 KEDOAH_04685 lysP lysine-specific permease — —
Escherichia coli ECRC102 0.99 NIAGMN_18015 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 NIAGMN_21265 lysP lysine-specific permease — —
Escherichia fergusonii Becca 0.98 EFB2_01132 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 EFB2_01700 Lysine-specific permease low > 86
Escherichia coli ECOR38 0.98 HEPCGN_19495 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.00 HEPCGN_22765 lysP lysine-specific permease low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.85 GFF4838 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.95 GFF3778 Lysine-specific permease low > 78
Enterobacter asburiae PDN3 0.80 EX28DRAFT_2865 23S rRNA (uracil-5-)-methyltransferase RumA 0.94 EX28DRAFT_0400 Amino acid transporters low > 76
Enterobacter sp. TBS_079 0.80 MPMX20_03654 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.95 MPMX20_03127 Lysine-specific permease low > 85
Klebsiella michiganensis M5al 0.79 BWI76_RS22810 23S rRNA (uracil(1939)-C(5))-methyltransferase 0.95 BWI76_RS19685 lysine transporter low > 92
Dickeya dianthicola ME23 0.66 DZA65_RS18150 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.84 DZA65_RS09595 amino acid permease low > 75
Dickeya dianthicola 67-19 0.66 HGI48_RS17075 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.85 HGI48_RS09290 amino acid permease low > 71
Dickeya dadantii 3937 0.65 DDA3937_RS17020 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.85 DDA3937_RS09265 amino acid permease low > 74
Pectobacterium carotovorum WPP14 0.64 HER17_RS04110 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.83 HER17_RS12835 amino acid permease 0.50 28
Pantoea sp. MT58 0.64 IAI47_04115 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.89 IAI47_06685 amino acid permease low > 76
Serratia liquefaciens MT49 0.63 IAI46_03595 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.90 IAI46_17210 amino acid permease low > 86
Rahnella sp. WP5 0.62 EX31_RS07960 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.88 EX31_RS19045 amino acid permease low > 89
Erwinia tracheiphila SCR3 0.59 LU632_RS06345 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.85 LU632_RS17290 amino acid permease low > 74
Xanthomonas campestris pv. campestris strain 8004 0.35 Xcc-8004.3669.1 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.31 Xcc-8004.3589.1 S-methylmethionine permease low > 74
Acinetobacter radioresistens SK82 0.34 MPMX26_00538 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.60 MPMX26_02492 Lysine-specific permease low > 36
Pseudomonas sp. S08-1 0.33 OH686_18955 23S rRNA (uracil-5-)-methyltransferase RumA 0.71 OH686_06350 Lysine-specific permease low > 80
Pseudomonas fluorescens FW300-N2C3 0.32 AO356_19055 23S rRNA methyltransferase 0.38 AO356_15120 amino acid transporter low > 104
Pseudomonas fluorescens FW300-N2E2 0.31 Pf6N2E2_5722 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.38 Pf6N2E2_4959 S-methylmethionine permease low > 103
Ralstonia sp. UNC404CL21Col 0.31 ABZR87_RS10885 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.76 ABZR87_RS12590 amino acid permease low > 80
Cupriavidus basilensis FW507-4G11 0.31 RR42_RS13170 23S rRNA methyltransferase 0.67 RR42_RS11100 gamma-aminobutyrate permease low > 128
Ralstonia solanacearum GMI1000 0.31 RS_RS06055 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.75 RS_RS08880 amino acid permease low > 80
Pseudomonas fluorescens FW300-N2E3 0.30 AO353_02715 23S rRNA methyltransferase 0.39 AO353_24825 amino acid transporter low > 101
Ralstonia solanacearum UW163 0.30 UW163_RS12710 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.75 UW163_RS14445 amino acid transporter — —
Pseudomonas putida KT2440 0.30 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.39 PP_3727 Amino-acid permease RocE low > 96
Ralstonia solanacearum IBSBF1503 0.30 RALBFv3_RS15245 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.75 RALBFv3_RS01135 amino acid transporter low > 76
Ralstonia solanacearum PSI07 0.30 RPSI07_RS18130 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.75 RPSI07_RS16340 amino acid permease low > 81
Pseudomonas fluorescens GW456-L13 0.30 PfGW456L13_2033 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.39 PfGW456L13_3211 Arginine permease RocE low > 87

Not shown: 58 genomes with orthologs for ECD_02630 only; 1 genomes with orthologs for ECD_02085 only