| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BL21 | 1.0 | ECD_03421 | | xylose divergent operon transcriptional activator | 1.0 | ECD_01220 | | oligopeptide ABC transporter ATPase | 0.40 | 57 |
| Escherichia coli BW25113 | 1.00 | b3569 | xylR | DNA-binding transcriptional activator, xylose-binding (NCBI) | 1.00 | b1246 | oppD | oligopeptide transporter ATP-binding component (NCBI) | low | > 76 |
| Escherichia coli ECRC102 | 1.00 | NIAGMN_13695 | xylR | DNA-binding transcriptional regulator XylR | 1.00 | NIAGMN_27590 | oppD | murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppD | — | — |
| Escherichia coli ECOR38 | 1.00 | HEPCGN_14820 | xylR | DNA-binding transcriptional regulator XylR | 0.99 | HEPCGN_25110 | oppD | murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppD | low | > 87 |
| Escherichia coli ECRC98 | 1.00 | JDDGAC_19565 | xylR | DNA-binding transcriptional regulator XylR | 1.00 | JDDGAC_05930 | oppD | murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppD | low | > 86 |
| Escherichia coli ECRC62 | 1.00 | BNILDI_03665 | xylR | DNA-binding transcriptional regulator XylR | 1.00 | BNILDI_18550 | oppD | murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppD | low | > 75 |
| Escherichia coli ECRC100 | 1.00 | OKFHMN_15935 | xylR | DNA-binding transcriptional regulator XylR | 1.00 | OKFHMN_28645 | oppD | murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppD | low | > 80 |
| Escherichia coli ECRC99 | 1.00 | KEDOAH_12215 | xylR | DNA-binding transcriptional regulator XylR | 1.00 | KEDOAH_25640 | oppD | murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppD | — | — |
| Escherichia coli Nissle 1917 | 1.00 | ECOLIN_RS20410 | | D-xylose utilization transcriptional activator XylR | 1.00 | ECOLIN_RS07525 | | murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppD | — | — |
| Escherichia coli ECRC101 | 1.00 | MCAODC_06450 | xylR | DNA-binding transcriptional regulator XylR | 1.00 | MCAODC_21615 | oppD | murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppD | low | > 87 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 1.00 | OHPLBJKB_00135 | | Xylose operon regulatory protein | 1.00 | OHPLBJKB_02437 | | Oligopeptide transport ATP-binding protein OppD | low | > 73 |
| Escherichia coli ECOR27 | 1.00 | NOLOHH_07880 | xylR | DNA-binding transcriptional regulator XylR | 1.00 | NOLOHH_20405 | oppD | murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppD | low | > 75 |
| Escherichia fergusonii Becca | 1.00 | EFB2_00238 | | Xylose operon regulatory protein | 1.00 | EFB2_02679 | | Oligopeptide transport ATP-binding protein OppD | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.91 | GFF442 | | Xylose activator XylR (AraC family) | 0.92 | GFF2743 | | Oligopeptide transport ATP-binding protein OppD (TC 3.A.1.5.1) | low | > 78 |
| Enterobacter asburiae PDN3 | 0.91 | EX28DRAFT_3834 | | Transcriptional regulators | 0.93 | EX28DRAFT_0871 | | oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain | low | > 76 |
| Enterobacter sp. TBS_079 | 0.91 | MPMX20_00161 | | Xylose operon regulatory protein | 0.93 | MPMX20_02584 | | Oligopeptide transport ATP-binding protein OppD | low | > 85 |
| Klebsiella michiganensis M5al | 0.89 | BWI76_RS27045 | | XylR family transcriptional regulator | 0.93 | BWI76_RS17225 | | oligopeptide ABC transporter ATP-binding protein OppD | low | > 92 |
| Pantoea sp. MT58 | 0.84 | IAI47_00175 | | XylR family transcriptional regulator | 0.87 | IAI47_09085 | | ABC transporter ATP-binding protein | low | > 76 |
| Rahnella sp. WP5 | 0.84 | EX31_RS09745 | | XylR family transcriptional regulator | 0.88 | EX31_RS10050 | | ABC transporter ATP-binding protein | low | > 89 |
| Serratia liquefaciens MT49 | 0.82 | IAI46_00300 | | DNA-binding transcriptional regulator | 0.89 | IAI46_14190 | | ABC transporter ATP-binding protein | low | > 86 |
| Pectobacterium carotovorum WPP14 | 0.82 | HER17_RS21065 | | XylR family transcriptional regulator | 0.86 | HER17_RS11005 | | ABC transporter ATP-binding protein | low | > 75 |
| Dickeya dianthicola ME23 | 0.81 | DZA65_RS00330 | | DNA-binding transcriptional regulator | 0.84 | DZA65_RS10875 | | ABC transporter ATP-binding protein | low | > 75 |
| Dickeya dianthicola 67-19 | 0.81 | HGI48_RS00330 | | XylR family transcriptional regulator | 0.84 | HGI48_RS10395 | | ABC transporter ATP-binding protein | low | > 71 |
| Dickeya dadantii 3937 | 0.81 | DDA3937_RS20915 | | DNA-binding transcriptional regulator | 0.84 | DDA3937_RS10390 | | ABC transporter ATP-binding protein | low | > 74 |
| Paraburkholderia sabiae LMG 24235 | 0.49 | QEN71_RS25880 | | DNA-binding transcriptional regulator | 0.52 | QEN71_RS18345 | | ABC transporter ATP-binding protein | low | > 153 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.47 | H281DRAFT_03875 | | transcriptional regulator, AraC family | 0.52 | H281DRAFT_03126 | | oligopeptide transport system ATP-binding protein | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.46 | BPHYT_RS32830 | | AraC family transcriptional regulator | 0.52 | BPHYT_RS22035 | | peptide ABC transporter ATP-binding protein | — | — |
| Paraburkholderia graminis OAS925 | 0.46 | ABIE53_004928 | | LacI family transcriptional regulator | 0.50 | ABIE53_004172 | | oligopeptide transport system ATP-binding protein | low | > 113 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.45 | Psyr_2882 | | transcriptional regulator, AraC family | 0.45 | Psyr_2540 | | Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.45 | Psyr_2882 | | transcriptional regulator, AraC family | 0.45 | Psyr_2540 | | Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal | low | > 86 |
| Pseudomonas simiae WCS417 | 0.45 | PS417_10950 | | AraC family transcriptional regulator | 0.42 | PS417_08075 | | methionine ABC transporter ATP-binding protein | low | > 88 |
| Herbaspirillum seropedicae SmR1 | 0.44 | HSERO_RS22455 | | AraC family transcriptional regulator | 0.42 | HSERO_RS07880 | | peptide ABC transporter substrate-binding protein | low | > 78 |
| Ralstonia sp. UNC404CL21Col | 0.44 | ABZR87_RS18215 | | DNA-binding transcriptional regulator | 0.47 | ABZR87_RS14290 | | ABC transporter ATP-binding protein | low | > 80 |
| Pseudomonas fluorescens FW300-N2E2 | 0.44 | Pf6N2E2_1453 | | Xylose activator XylR (AraC family) | 0.40 | Pf6N2E2_1812 | | peptide ABC transporter, ATP-binding protein | low | > 103 |
| Pseudomonas fluorescens SBW25 | 0.43 | PFLU_RS11310 | | DNA-binding transcriptional regulator | 0.40 | PFLU_RS08045 | | ABC transporter ATP-binding protein | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.43 | PFLU_RS11310 | | DNA-binding transcriptional regulator | 0.40 | PFLU_RS08045 | | ABC transporter ATP-binding protein | low | > 109 |
Not shown: 6 genomes with orthologs for ECD_03421 only; 20 genomes with orthologs for ECD_01220 only