| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_09335 | | histidine/lysine/arginine/ornithine ABC transporter ATP-binding protein HisP | 1.0 | CSW01_19245 | | methyl-accepting chemotaxis protein | 0.50 | 14 |
| Burkholderia phytofirmans PsJN | 0.68 | BPHYT_RS07685 | | ABC transporter for L-Arginine, putative ATPase component (from data) | 0.14 | BPHYT_RS19810 | | chemotaxis protein | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.68 | QEN71_RS23385 | | ABC transporter ATP-binding protein | 0.15 | QEN71_RS10045 | | methyl-accepting chemotaxis protein | low | > 153 |
| Pseudomonas fluorescens FW300-N2E3 | 0.67 | AO353_17705 | | amino acid transporter | 0.22 | AO353_26895 | | chemotaxis protein | low | > 101 |
| Rhodospirillum rubrum S1H | 0.67 | Rru_A2250 | | ABC transporter component (NCBI) | 0.13 | Rru_A1293 | | chemotaxis sensory transducer (NCBI) | low | > 58 |
| Azospirillum brasilense Sp245 | 0.66 | AZOBR_RS00690 | | ATP-binding protein | 0.12 | AZOBR_RS14020 | | methyl-accepting chemotaxis protein | low | > 97 |
| Pseudomonas stutzeri RCH2 | 0.66 | Psest_0139 | | ABC-type histidine transport system, ATPase component | 0.21 | Psest_2479 | | Methyl-accepting chemotaxis protein | low | > 67 |
| Pseudomonas lactucae CFBP13502 | 0.66 | GEMAOFIL_00521 | | Octopine permease ATP-binding protein P | 0.23 | GEMAOFIL_03992 | | hypothetical protein | low | > 96 |
| Pseudomonas fluorescens FW300-N1B4 | 0.65 | Pf1N1B4_1640 | | Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1) | 0.21 | Pf1N1B4_1495 | | Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.65 | Pf6N2E2_3855 | | Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1) | 0.22 | Pf6N2E2_5131 | | Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) | low | > 103 |
| Pseudomonas sp. DMC3 | 0.65 | GFF4118 | | Octopine permease ATP-binding protein P | 0.22 | GFF2930 | | hypothetical protein | low | > 89 |
| Pseudomonas aeruginosa MRSN321 | 0.65 | DY961_RS11605 | | ABC transporter ATP-binding protein | 0.21 | DY961_RS19690 | | methyl-accepting chemotaxis protein | low | > 100 |
| Pseudomonas fluorescens FW300-N2C3 | 0.65 | AO356_09895 | | ABC transporter for L-Lysine, ATPase component (from data) | 0.22 | AO356_15960 | | chemotaxis protein | low | > 104 |
| Pseudomonas aeruginosa PA14 | 0.65 | IKLFDK_27730 | | ATP-binding protein | 0.21 | IKLFDK_07705 | | methyl-accepting chemotaxis protein | low | > 98 |
| Pseudomonas aeruginosa PUPa3 | 0.65 | DQ20_RS50495 | | ABC transporter ATP-binding protein | 0.21 | DQ20_RS53800 | | methyl-accepting chemotaxis protein | low | > 101 |
| Pseudomonas orientalis W4I3 | 0.65 | QF045_RS04570 | | ABC transporter ATP-binding protein | 0.22 | QF045_RS05220 | | methyl-accepting chemotaxis protein | low | > 93 |
| Pseudomonas sp. RS175 | 0.65 | PFR28_04915 | | Octopine permease ATP-binding protein P | 0.22 | PFR28_03741 | | hypothetical protein | low | > 88 |
| Pseudomonas sp. SVBP6 | 0.65 | COO64_RS00290 | | ABC transporter ATP-binding protein | 0.20 | COO64_RS18965 | | methyl-accepting chemotaxis protein | low | > 93 |
| Pseudomonas sp. S08-1 | 0.65 | OH686_14505 | | ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines) | 0.20 | OH686_00455 | | Methyl-accepting chemotaxis sensor/transducer protein | low | > 80 |
| Pseudomonas fluorescens SBW25-INTG | 0.65 | PFLU_RS01540 | | ABC transporter ATP-binding protein | 0.21 | PFLU_RS02210 | | methyl-accepting chemotaxis protein | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.65 | PFLU_RS01540 | | ABC transporter ATP-binding protein | 0.21 | PFLU_RS02210 | | methyl-accepting chemotaxis protein | low | > 109 |
| Pseudomonas fluorescens GW456-L13 | 0.65 | PfGW456L13_376 | | Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1) | 0.20 | PfGW456L13_228 | | Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) | low | > 87 |
| Pseudomonas syringae pv. syringae B728a | 0.65 | Psyr_4911 | | amino acid ABC transporter ATP-binding protein, PAAT family | 0.22 | Psyr_3114 | | methyl-accepting chemotaxis sensory transducer | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.65 | Psyr_4911 | | amino acid ABC transporter ATP-binding protein, PAAT family | 0.22 | Psyr_3114 | | methyl-accepting chemotaxis sensory transducer | low | > 86 |
| Pseudomonas sp. BP01 | 0.64 | JOY50_RS26255 | | ABC transporter ATP-binding protein | 0.21 | JOY50_RS07660 | | methyl-accepting chemotaxis protein | low | > 84 |
Not shown: 45 genomes with orthologs for CSW01_09335 only; 7 genomes with orthologs for CSW01_19245 only