Conservation of cofitness between CSW01_03330 and CSW01_10820 in Vibrio cholerae E7946 ATCC 55056

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03330 transcription elongation factor GreA 1.0 CSW01_10820 bifunctional UDP-sugar hydrolase/5'-nucleotidase 0.58 4
Shewanella sp. ANA-3 0.71 Shewana3_1017 transcription elongation factor GreA (RefSeq) 0.55 Shewana3_2454 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor (RefSeq) low > 73
Shewanella oneidensis MR-1 0.71 SO1191 greA transcription elongation factor GreA (NCBI ptt file) 0.55 SO2001 ushA 5'-nucleotidase (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.71 Shew_2837 transcription elongation factor GreA (RefSeq) 0.54 Shew_2135 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor (RefSeq) low > 60
Shewanella amazonensis SB2B 0.69 Sama_0951 GreA/GreB family elongation factor (RefSeq) 0.54 Sama_2021 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor (RefSeq) low > 62
Escherichia coli ECRC100 0.68 OKFHMN_18045 greA transcription elongation factor GreA 0.64 OKFHMN_08110 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase 0.84 45
Escherichia coli ECRC62 0.68 BNILDI_01690 greA transcription elongation factor GreA 0.64 BNILDI_22460 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase low > 75
Escherichia coli ECOR38 0.68 HEPCGN_16920 greA transcription elongation factor GreA 0.63 HEPCGN_06730 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase low > 87
Escherichia coli BL21 0.68 ECD_03046 transcript cleavage factor 0.64 ECD_00431 bifunctional UDP-sugar hydrolase/5'-nucleotidase low > 61
Escherichia coli Nissle 1917 0.68 ECOLIN_RS18320 transcription elongation factor GreA 0.64 ECOLIN_RS02845 bifunctional UDP-sugar hydrolase/5'-nucleotidase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.68 OHPLBJKB_00519 Transcription elongation factor GreA 0.64 OHPLBJKB_03194 Protein UshA low > 73
Escherichia coli ECRC102 0.68 NIAGMN_15805 greA transcription elongation factor GreA 0.64 NIAGMN_06160 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase — —
Escherichia coli BW25113 0.68 b3181 greA transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) 0.64 b0480 ushA UDP-sugar hydrolase (NCBI) low > 76
Escherichia coli ECRC101 0.68 MCAODC_08565 greA transcription elongation factor GreA 0.64 MCAODC_27330 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase low > 87
Escherichia coli ECRC99 0.68 KEDOAH_10105 greA transcription elongation factor GreA 0.64 KEDOAH_19860 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase — —
Escherichia coli ECOR27 0.68 NOLOHH_09845 greA transcription elongation factor GreA 0.64 NOLOHH_01040 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase low > 75
Escherichia fergusonii Becca 0.68 EFB2_00642 Transcription elongation factor GreA 0.64 EFB2_03578 Protein UshA low > 86
Escherichia coli ECRC98 0.68 JDDGAC_21670 greA transcription elongation factor GreA 0.64 JDDGAC_11755 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.67 GFF2922 Transcription elongation factor GreA 0.64 GFF4400 'UDP-sugar hydrolase (EC 3.6.1.45); 5'-nucleotidase (EC 3.1.3.5)' transl_table=11 low > 78
Enterobacter sp. TBS_079 0.66 MPMX20_04085 Transcription elongation factor GreA 0.64 MPMX20_01081 Protein UshA low > 85
Enterobacter asburiae PDN3 0.66 EX28DRAFT_3232 transcription elongation factor GreA 0.64 EX28DRAFT_2478 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases low > 76
Klebsiella michiganensis M5al 0.66 BWI76_RS25160 transcription elongation factor GreA 0.63 BWI76_RS06865 bifunctional UDP-sugar hydrolase/5'-nucleotidase low > 92
Dickeya dadantii 3937 0.66 DDA3937_RS03015 transcription elongation factor GreA 0.65 DDA3937_RS05815 bifunctional UDP-sugar hydrolase/5'-nucleotidase — —
Pectobacterium carotovorum WPP14 0.65 HER17_RS18330 transcription elongation factor GreA 0.65 HER17_RS15670 bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA — —
Dickeya dianthicola 67-19 0.65 HGI48_RS03185 transcription elongation factor GreA 0.65 HGI48_RS05865 bifunctional UDP-sugar hydrolase/5'-nucleotidase low > 71
Dickeya dianthicola ME23 0.65 DZA65_RS03180 transcription elongation factor GreA 0.65 DZA65_RS06190 bifunctional UDP-sugar hydrolase/5'-nucleotidase low > 75
Pantoea sp. MT58 0.64 IAI47_17080 transcription elongation factor GreA 0.55 IAI47_14425 bifunctional UDP-sugar hydrolase/5'-nucleotidase low > 76
Erwinia amylovora T8 0.63 OLJFJH_07185 transcription elongation factor GreA 0.63 OLJFJH_17735 bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA low > 58
Serratia liquefaciens MT49 0.63 IAI46_01880 transcription elongation factor GreA 0.64 IAI46_05290 bifunctional UDP-sugar hydrolase/5'-nucleotidase low > 86
Erwinia tracheiphila SCR3 0.58 LU632_RS21165 greA transcription elongation factor GreA 0.63 LU632_RS18065 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA low > 74
Pseudomonas putida KT2440 0.56 PP_4722 Transcription elongation factor GreA 0.10 PP_1414 5'-nucleotidase - 2',3'-cyclic phosphodiesterase low > 96
Pseudomonas fluorescens FW300-N2E3 0.56 AO353_05625 transcription elongation factor GreA 0.10 AO353_04885 multifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/5'-nucleotidase/3'-nucleotidase low > 101
Azospirillum sp. SherDot2 0.52 MPMX19_02300 Transcription elongation factor GreA 0.12 MPMX19_05245 Trifunctional nucleotide phosphoesterase protein YfkN 0.45 77
Bosea sp. OAE506 0.50 ABIE41_RS11905 transcription elongation factor GreA 0.09 ABIE41_RS05985 bifunctional UDP-sugar hydrolase/5'-nucleotidase — —
Sphingomonas koreensis DSMZ 15582 0.50 Ga0059261_0008 transcription elongation factor GreA 0.06 Ga0059261_1283 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases — —
Rhodopseudomonas palustris CGA009 0.49 TX73_021095 transcription elongation factor GreA 0.10 TX73_004920 bifunctional metallophosphatase/5'-nucleotidase — —
Rhodospirillum rubrum S1H 0.49 Rru_A2887 GreA/GreB family elongation factor (NCBI) 0.08 Rru_A2483 5'-Nucleotidase (NCBI) low > 58
Magnetospirillum magneticum AMB-1 0.49 AMB_RS03610 transcription elongation factor GreA 0.08 AMB_RS18255 bifunctional metallophosphatase/5'-nucleotidase low > 64

Not shown: 69 genomes with orthologs for CSW01_03330 only; 2 genomes with orthologs for CSW01_10820 only