Conservation of cofitness between CSW01_06045 and CSW01_10460 in Vibrio cholerae E7946 ATCC 55056

61 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_06045 lipoprotein 1.0 CSW01_10460 Nif3-like dinuclear metal center hexameric protein 0.43 16
Marinobacter adhaerens HP15 0.34 HP15_2555 OmpA/MotB domain protein 0.47 HP15_2426 NGG1p interacting factor 3, NIF3 low > 73
Escherichia coli BL21 0.34 ECD_03402 multicopy suppressor of bamB; outer membrane lipoprotein 0.54 ECD_00670 NIF3 family metal-binding protein low > 61
Pantoea sp. MT58 0.33 IAI47_00140 OmpA family lipoprotein 0.57 IAI47_13810 type 2 GTP cyclohydrolase I low > 76
Pantoea agglomerans CFBP13505 P0401 0.33 PagCFBP13505_RS19200 OmpA family lipoprotein 0.58 PagCFBP13505_RS03495 Nif3-like dinuclear metal center hexameric protein low > 74
Escherichia fergusonii Becca 0.33 EFB2_00255 putative lipoprotein YiaD 0.55 EFB2_03393 GTP cyclohydrolase 1 type 2 low > 86
Klebsiella pneumoniae MKP103 0.33 KDGMDA_07665 OmpA family lipoprotein 0.53 KDGMDA_16665 type 2 GTP cyclohydrolase I low > 95
Klebsiella michiganensis M5al 0.33 BWI76_RS26935 OmpA family lipoprotein 0.53 BWI76_RS08345 Nif3-like dinuclear metal center protein low > 92
Escherichia coli ECRC98 0.32 JDDGAC_19655 yiaD OmpA family lipoprotein 0.55 JDDGAC_10665 ybgI radiation resistance protein YbgI 0.38 63
Escherichia coli Nissle 1917 0.32 ECOLIN_RS20325 OmpA family lipoprotein 0.55 ECOLIN_RS03800 radiation resistance protein YbgI low > 55
Escherichia coli ECRC62 0.32 BNILDI_03575 yiaD OmpA family lipoprotein 0.55 BNILDI_21390 ybgI radiation resistance protein YbgI low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.32 GFF459 Outer membrane protein A precursor 0.55 GFF4615 FIG137478: Hypothetical protein YbgI low > 78
Escherichia coli ECRC100 0.32 OKFHMN_16025 yiaD OmpA family lipoprotein 0.55 OKFHMN_07010 ybgI radiation resistance protein YbgI low > 79
Escherichia coli ECOR38 0.32 HEPCGN_14915 yiaD OmpA family lipoprotein 0.55 HEPCGN_01200 ybgI radiation resistance protein YbgI low > 88
Escherichia coli HS(pFamp)R (ATCC 700891) 0.32 OHPLBJKB_00154 putative lipoprotein YiaD 0.55 OHPLBJKB_03007 GTP cyclohydrolase 1 type 2 low > 74
Escherichia coli ECRC99 0.32 KEDOAH_12125 yiaD OmpA family lipoprotein 0.55 KEDOAH_20955 ybgI radiation resistance protein YbgI — —
Escherichia coli ECRC101 0.32 MCAODC_06540 yiaD OmpA family lipoprotein 0.55 MCAODC_26230 ybgI radiation resistance protein YbgI low > 87
Escherichia coli BW25113 0.32 b3552 yiaD predicted outer membrane lipoprotien (NCBI) 0.55 b0710 ybgI conserved metal-binding protein (NCBI) low > 76
Escherichia coli ECOR27 0.32 NOLOHH_07970 yiaD OmpA family lipoprotein 0.55 NOLOHH_23395 ybgI radiation resistance protein YbgI low > 76
Escherichia coli ECRC102 0.32 NIAGMN_13785 yiaD OmpA family lipoprotein 0.55 NIAGMN_05065 ybgI radiation resistance protein YbgI low > 80
Enterobacter sp. TBS_079 0.32 MPMX20_00182 putative lipoprotein YiaD 0.54 MPMX20_01344 GTP cyclohydrolase 1 type 2 low > 85
Alteromonas macleodii MIT1002 0.32 MIT1002_04106 Inner membrane lipoprotein YiaD precursor 0.51 MIT1002_01972 metal-binding protein low > 70
Enterobacter asburiae PDN3 0.31 EX28DRAFT_3812 Outer membrane protein and related peptidoglycan-associated (lipo)proteins 0.54 EX28DRAFT_2277 dinuclear metal center protein, YbgI/SA1388 family low > 76
Pseudomonas stutzeri RCH2 0.31 Psest_3218 Outer membrane protein and related peptidoglycan-associated (lipo)proteins 0.50 Psest_3295 dinuclear metal center protein, YbgI/SA1388 family low > 67
Erwinia amylovora T8 0.31 OLJFJH_05070 OmpA family lipoprotein 0.58 OLJFJH_17010 UPF0135 protein ybgI low > 58
Fusobacterium nucleatum SB010 0.30 HUW76_03925 OmpA family protein 0.13 HUW76_03660 Nif3-like dinuclear metal center hexameric protein low > 35
Serratia liquefaciens MT49 0.29 IAI46_00110 OmpA family lipoprotein 0.58 IAI46_06210 type 2 GTP cyclohydrolase I low > 87
Acinetobacter baumannii LAC-4 0.29 RR41_RS14865 OmpA family protein 0.44 RR41_RS05695 Nif3-like dinuclear metal center hexameric protein — —
Shewanella oneidensis MR-1 0.28 SO3969 OmpA family protein (NCBI ptt file) 0.53 SO2621 conserved hypothetical protein TIGR00486 (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.27 Sama_3096 OmpA family protein (RefSeq) 0.54 Sama_2050 hypothetical protein (RefSeq) low > 62
Shewanella sp. ANA-3 0.27 Shewana3_0665 OmpA/MotB domain-containing protein (RefSeq) 0.53 Shewana3_1758 hypothetical protein (RefSeq) low > 73
Rahnella sp. WP5 0.27 EX31_RS05890 OmpA family lipoprotein 0.57 EX31_RS23375 type 2 GTP cyclohydrolase I low > 89
Pseudomonas segetis P6 0.27 ACVTMO_RS18275 OmpA family protein 0.50 ACVTMO_RS19035 Nif3-like dinuclear metal center hexameric protein low > 75
Shewanella loihica PV-4 0.26 Shew_0908 OmpA/MotB domain-containing protein (RefSeq) 0.55 Shew_1572 hypothetical protein (RefSeq) — —
Pseudomonas fluorescens FW300-N2E2 0.25 Pf6N2E2_5327 Outer membrane protein assembly factor YaeT precursor 0.51 Pf6N2E2_5256 FIG137478: Hypothetical protein YbgI low > 103
Pseudomonas sp. RS175 0.25 PFR28_00255 putative lipoprotein YiaD 0.50 PFR28_00192 GTP cyclohydrolase 1 type 2 0.26 19
Pseudomonas fluorescens FW300-N2C3 0.25 AO356_17015 cell envelope biogenesis protein OmpA 0.50 AO356_16660 metal-binding protein low > 104
Pseudomonas sp. DMC3 0.25 GFF4447 putative lipoprotein YiaD 0.50 GFF1847 GTP cyclohydrolase 1 type 2 low > 89
Pseudomonas orientalis W4I3 0.24 QF045_RS07555 OmpA family protein 0.50 QF045_RS06690 Nif3-like dinuclear metal center hexameric protein low > 93
Acinetobacter radioresistens SK82 0.24 MPMX26_02417 putative lipoprotein YiaD 0.45 MPMX26_00997 GTP cyclohydrolase 1 type 2 low > 36
Pseudomonas fluorescens GW456-L13 0.24 PfGW456L13_1624 Outer membrane protein assembly factor YaeT precursor 0.49 PfGW456L13_4997 FIG137478: Hypothetical protein YbgI low > 87
Pseudomonas fluorescens FW300-N2E3 0.24 AO353_15165 cell envelope biogenesis protein OmpA 0.50 AO353_05085 metal-binding protein low > 101
Pseudomonas sp. S08-1 0.24 OH686_06290 Outer membrane porin, OmpA family 0.49 OH686_08455 GTP cyclohydrolase 1 type 2-related YbgI low > 80
Pseudomonas lactucae CFBP13502 0.24 GEMAOFIL_01116 putative lipoprotein YiaD 0.51 GEMAOFIL_00948 GTP cyclohydrolase 1 type 2 low > 96
Pseudomonas fluorescens SBW25-INTG 0.24 PFLU_RS04630 OmpA family lipoprotein 0.50 PFLU_RS03760 Nif3-like dinuclear metal center hexameric protein low > 109
Pseudomonas fluorescens SBW25 0.24 PFLU_RS04630 OmpA family lipoprotein 0.50 PFLU_RS03760 Nif3-like dinuclear metal center hexameric protein low > 109
Pseudomonas simiae WCS417 0.23 PS417_04565 cell envelope biogenesis protein OmpA 0.50 PS417_03710 metal-binding protein low > 88
Pseudomonas sp. SVBP6 0.23 COO64_RS03450 OmpA family protein 0.51 COO64_RS11720 Nif3-like dinuclear metal center hexameric protein low > 93
Pseudomonas aeruginosa PA14 0.23 IKLFDK_03660 cell envelope biogenesis protein OmpA 0.50 IKLFDK_01865 Nif3-like dinuclear metal center hexameric protein low > 98
Pseudomonas aeruginosa PUPa3 0.23 DQ20_RS44495 OmpA family protein 0.50 DQ20_RS56710 Nif3-like dinuclear metal center hexameric protein low > 101
Pseudomonas aeruginosa MRSN321 0.23 DY961_RS08330 OmpA family protein 0.50 DY961_RS24250 Nif3-like dinuclear metal center hexameric protein low > 100
Pseudomonas putida KT2440 0.22 PP_0773 OmpA/MotB domain-containing protein 0.50 PP_1302 putative metal-binding hydrolase-oxidase enzyme low > 96
Pseudomonas sp. BP01 0.22 JOY50_RS19390 OmpA family protein 0.50 JOY50_RS15280 Nif3-like dinuclear metal center hexameric protein low > 84
Pseudomonas syringae pv. syringae B728a ΔmexB 0.22 Psyr_1005 OmpA/MotB 0.50 Psyr_4129 Protein of unknown function DUF34 low > 86
Pseudomonas syringae pv. syringae B728a 0.22 Psyr_1005 OmpA/MotB 0.50 Psyr_4129 Protein of unknown function DUF34 low > 86
Hydrogenophaga sp. GW460-11-11-14-LB1 0.21 GFF286 Outer membrane lipoprotein omp16 precursor 0.41 GFF1298 FIG137478: Hypothetical protein YbgI — —
Herbaspirillum seropedicae SmR1 0.21 HSERO_RS21940 membrane protein 0.45 HSERO_RS20255 metal-binding protein low > 78
Ralstonia sp. UNC404CL21Col 0.21 ABZR87_RS16255 OmpA family protein 0.47 ABZR87_RS02395 Nif3-like dinuclear metal center hexameric protein low > 80
Ralstonia solanacearum IBSBF1503 0.20 RALBFv3_RS04400 OmpA family protein 0.46 RALBFv3_RS06740 Nif3-like dinuclear metal center hexameric protein low > 76
Ralstonia solanacearum UW163 0.20 UW163_RS09270 OmpA family protein 0.46 UW163_RS06875 Nif3-like dinuclear metal center hexameric protein — —
Ralstonia solanacearum PSI07 0.20 RPSI07_RS12970 OmpA family protein 0.46 RPSI07_RS10495 Nif3-like dinuclear metal center hexameric protein low > 81
Variovorax sp. SCN45 0.19 GFF5449 Probable lipoprotein YiaD 0.39 GFF5367 GTP cyclohydrolase 1 type 2 homolog YbgI low > 127

Not shown: 19 genomes with orthologs for CSW01_06045 only; 17 genomes with orthologs for CSW01_10460 only