Conservation of cofitness between CSW01_03020 and CSW01_10020 in Vibrio cholerae E7946 ATCC 55056

40 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03020 serine endoprotease DegQ 1.0 CSW01_10020 ROK family protein 0.64 18
Dickeya dadantii 3937 0.63 DDA3937_RS01605 serine endoprotease DegQ 0.50 DDA3937_RS10675 ROK family transcriptional regulator low > 74
Serratia liquefaciens MT49 0.63 IAI46_22390 serine endoprotease DegQ 0.50 IAI46_11685 ROK family transcriptional regulator low > 87
Dickeya dianthicola ME23 0.63 DZA65_RS01585 serine endoprotease DegQ 0.49 DZA65_RS11145 ROK family transcriptional regulator low > 75
Dickeya dianthicola 67-19 0.63 HGI48_RS01520 serine endoprotease DegQ 0.49 HGI48_RS10675 ROK family transcriptional regulator low > 71
Pectobacterium carotovorum WPP14 0.62 HER17_RS19985 serine endoprotease DegQ 0.50 HER17_RS10735 ROK family transcriptional regulator low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.58 GFF2974 Outer membrane stress sensor protease DegQ, serine protease 0.47 GFF1785 Mlc, transcriptional repressor of MalT (the transcriptional activator of maltose regulon) and manXYZ operon low > 78
Klebsiella michiganensis M5al 0.58 BWI76_RS25365 serine endoprotease DegQ 0.47 BWI76_RS15955 transcriptional regulator low > 92
Pantoea sp. MT58 0.57 IAI47_17260 serine endoprotease DegQ 0.45 IAI47_09750 ROK family transcriptional regulator low > 76
Enterobacter sp. TBS_079 0.57 MPMX20_04138 Periplasmic pH-dependent serine endoprotease DegQ 0.47 MPMX20_02063 Protein mlc low > 85
Enterobacter asburiae PDN3 0.57 EX28DRAFT_3283 periplasmic serine protease, Do/DeqQ family 0.48 EX28DRAFT_1493 Transcriptional regulator/sugar kinase low > 76
Pantoea agglomerans CFBP13505 P0401 0.57 PagCFBP13505_RS09425 serine endoprotease DegQ 0.45 PagCFBP13505_RS06405 ROK family transcriptional regulator low > 74
Klebsiella pneumoniae MKP103 0.57 KDGMDA_06190 serine endoprotease DegQ 0.48 KDGMDA_21230 transcriptional regulator low > 95
Escherichia coli ECRC62 0.57 BNILDI_01930 degQ serine endoprotease DegQ 0.47 BNILDI_17035 mlc DNA-binding transcriptional repressor Mlc low > 75
Escherichia coli Nissle 1917 0.57 ECOLIN_RS18545 serine endoprotease DegQ 0.47 ECOLIN_RS08905 sugar metabolism global transcriptional regulator Mlc — —
Escherichia coli BW25113 0.57 b3234 degQ serine endoprotease, periplasmic (NCBI) 0.46 b1594 dgsA DNA-binding transcriptional repressor (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.57 OHPLBJKB_00470 Periplasmic pH-dependent serine endoprotease DegQ 0.46 OHPLBJKB_02132 Protein mlc low > 74
Escherichia coli BL21 0.57 ECD_03094 serine endoprotease, periplasmic 0.46 ECD_01563 glucosamine anaerobic growth regulon transcriptional repressor; autorepressor — —
Escherichia coli ECOR27 0.57 NOLOHH_09605 degQ serine endoprotease DegQ 0.47 NOLOHH_18245 mlc DNA-binding transcriptional repressor Mlc low > 76
Escherichia fergusonii Becca 0.57 EFB2_00596 Periplasmic pH-dependent serine endoprotease DegQ 0.47 EFB2_02398 Protein mlc low > 86
Escherichia coli ECRC102 0.57 NIAGMN_15565 degQ serine endoprotease DegQ 0.47 NIAGMN_00335 mlc DNA-binding transcriptional repressor Mlc low > 80
Escherichia coli ECRC99 0.57 KEDOAH_10345 degQ serine endoprotease DegQ 0.47 KEDOAH_00365 mlc DNA-binding transcriptional repressor Mlc — —
Escherichia coli ECRC98 0.57 JDDGAC_21430 degQ serine endoprotease DegQ 0.47 JDDGAC_02330 mlc DNA-binding transcriptional repressor Mlc low > 87
Escherichia coli ECRC101 0.57 MCAODC_08325 degQ serine endoprotease DegQ 0.47 MCAODC_17670 mlc DNA-binding transcriptional repressor Mlc low > 87
Escherichia coli ECOR38 0.57 HEPCGN_16675 degQ serine endoprotease DegQ 0.47 HEPCGN_06115 mlc DNA-binding transcriptional repressor Mlc low > 88
Escherichia coli ECRC100 0.57 OKFHMN_17805 degQ serine endoprotease DegQ 0.47 OKFHMN_27740 mlc DNA-binding transcriptional repressor Mlc low > 79
Rahnella sp. WP5 0.56 EX31_RS12475 Do family serine endopeptidase 0.50 EX31_RS16985 ROK family transcriptional regulator low > 89
Erwinia tracheiphila HP pepo 2.2 0.54 IJEDHG_13665 serine endoprotease DegQ 0.47 IJEDHG_23280 transcriptional regulator low > 61
Erwinia tracheiphila SCR3 0.54 LU632_RS21355 Do family serine endopeptidase 0.47 LU632_RS12305 ROK family transcriptional regulator 0.55 13
Erwinia amylovora T8 0.52 OLJFJH_00660 serine endoprotease DegP 0.48 OLJFJH_14275 transcriptional regulator low > 58
Dyella japonica UNC79MFTsu3.2 0.41 ABZR86_RS17545 DegQ family serine endoprotease 0.14 ABZR86_RS19180 ROK family transcriptional regulator low > 74
Sinorhizobium meliloti 1021 0.29 SMc02365 protease precursor protein 0.15 SMa2303 ROK family transcriptional regulator low > 103
Bosea sp. OAE506 0.28 ABIE41_RS12865 DegQ family serine endoprotease 0.18 ABIE41_RS06840 ROK family protein low > 77
Bacteroides thetaiotaomicron VPI-5482 0.28 BT1312 serine protease precursor (NCBI ptt file) 0.17 BT0433 putative xylose repressor (NCBI ptt file) — —
Bacteroides ovatus ATCC 8483 0.27 BACOVA_00614 peptidase Do 0.18 BACOVA_01791 hypothetical protein 0.80 40
Phaeobacter inhibens DSM 17395 0.27 PGA1_c23690 protease do 0.19 PGA1_262p00420 Transcriptional regulator/sugar kinase low > 62
Caulobacter crescentus NA1000 Δfur 0.25 CCNA_02846 DegP/HtrA-family serine protease 0.09 CCNA_01870 NagC-family transcriptional regulator low > 67
Caulobacter crescentus NA1000 0.25 CCNA_02846 DegP/HtrA-family serine protease 0.09 CCNA_01870 NagC-family transcriptional regulator low > 66
Bacteroides stercoris CC31F 0.25 HMPREF1181_RS10785 trypsin-like peptidase domain-containing protein 0.17 HMPREF1181_RS04110 ROK family transcriptional regulator low > 56
Phocaeicola dorei CL03T12C01 0.25 ABI39_RS13980 Do family serine endopeptidase 0.18 ABI39_RS21185 ROK family transcriptional regulator low > 72
Phocaeicola vulgatus CL09T03C04 0.25 HMPREF1058_RS17765 Do family serine endopeptidase 0.18 HMPREF1058_RS07285 ROK family transcriptional regulator low > 67

Not shown: 52 genomes with orthologs for CSW01_03020 only; 5 genomes with orthologs for CSW01_10020 only