| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_07570 | | nucleotide-binding protein | 1.0 | CSW01_04005 | | 2,3-dihydroxybenzoate-AMP ligase | 0.58 | 6 |
| Klebsiella michiganensis M5al | 0.64 | BWI76_RS06410 | | YajQ family cyclic di-GMP-binding protein | 0.44 | BWI76_RS07750 | | 2,3-dihydroxybenzoate-AMP ligase | low | > 92 |
| Escherichia coli ECRC99 | 0.62 | KEDOAH_19575 | yajQ | nucleotide binding protein YajQ | 0.46 | KEDOAH_20400 | entE | (2,3-dihydroxybenzoyl)adenylate synthase EntE | — | — |
| Escherichia coli ECOR38 | 0.62 | HEPCGN_07020 | yajQ | nucleotide binding protein YajQ | 0.46 | HEPCGN_00710 | entE | (2,3-dihydroxybenzoyl)adenylate synthase EntE | low | > 88 |
| Dickeya dadantii 3937 | 0.62 | DDA3937_RS05560 | | YajQ family cyclic di-GMP-binding protein | 0.47 | DDA3937_RS14710 | | (2,3-dihydroxybenzoyl)adenylate synthase | low | > 74 |
| Escherichia coli ECOR27 | 0.62 | NOLOHH_01340 | yajQ | nucleotide binding protein YajQ | 0.46 | NOLOHH_23945 | entE | (2,3-dihydroxybenzoyl)adenylate synthase EntE | low | > 76 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.62 | OHPLBJKB_03250 | | hypothetical protein | 0.46 | OHPLBJKB_03112 | | Enterobactin synthase component E | low | > 74 |
| Escherichia fergusonii Becca | 0.62 | EFB2_03631 | | hypothetical protein | 0.46 | EFB2_03498 | | Enterobactin synthase component E | low | > 86 |
| Escherichia coli ECRC62 | 0.62 | BNILDI_22755 | yajQ | nucleotide binding protein YajQ | 0.46 | BNILDI_21955 | entE | (2,3-dihydroxybenzoyl)adenylate synthase EntE | low | > 75 |
| Escherichia coli ECRC100 | 0.62 | OKFHMN_08390 | yajQ | nucleotide binding protein YajQ | 0.46 | OKFHMN_07570 | entE | (2,3-dihydroxybenzoyl)adenylate synthase EntE | — | — |
| Escherichia coli Nissle 1917 | 0.62 | ECOLIN_RS02565 | | nucleotide binding protein YajQ | 0.46 | ECOLIN_RS03260 | | (2,3-dihydroxybenzoyl)adenylate synthase EntE | — | — |
| Escherichia coli ECRC98 | 0.62 | JDDGAC_12045 | yajQ | nucleotide binding protein YajQ | 0.46 | JDDGAC_11215 | entE | (2,3-dihydroxybenzoyl)adenylate synthase EntE | low | > 87 |
| Escherichia coli ECRC102 | 0.62 | NIAGMN_06445 | yajQ | nucleotide binding protein YajQ | 0.46 | NIAGMN_05625 | entE | (2,3-dihydroxybenzoyl)adenylate synthase EntE | low | > 80 |
| Dickeya dianthicola 67-19 | 0.62 | HGI48_RS05620 | | YajQ family cyclic di-GMP-binding protein | 0.47 | HGI48_RS14650 | | (2,3-dihydroxybenzoyl)adenylate synthase | — | — |
| Enterobacter asburiae PDN3 | 0.62 | EX28DRAFT_2545 | | Uncharacterized protein conserved in bacteria | 0.44 | EX28DRAFT_2373 | | 2,3-dihydroxybenzoate-AMP ligase | low | > 76 |
| Escherichia coli ECRC101 | 0.62 | MCAODC_27615 | yajQ | nucleotide binding protein YajQ | 0.46 | MCAODC_26785 | entE | (2,3-dihydroxybenzoyl)adenylate synthase EntE | low | > 87 |
| Escherichia coli BW25113 | 0.62 | b0426 | yajQ | orf, hypothetical protein (VIMSS) | 0.46 | b0594 | entE | 2,3-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex (NCBI) | low | > 76 |
| Escherichia coli BL21 | 0.62 | ECD_00374 | | phage Phi6 host factor, ATP/GTP binding protein | 0.45 | ECD_00561 | | 2,3-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex | low | > 61 |
| Enterobacter sp. TBS_079 | 0.62 | MPMX20_01017 | | hypothetical protein | 0.44 | MPMX20_01248 | | Enterobactin synthase component E | low | > 85 |
| Serratia liquefaciens MT49 | 0.62 | IAI46_04955 | | YajQ family cyclic di-GMP-binding protein | 0.46 | IAI46_18320 | | (2,3-dihydroxybenzoyl)adenylate synthase | low | > 87 |
| Pectobacterium carotovorum WPP14 | 0.62 | HER17_RS15905 | | YajQ family cyclic di-GMP-binding protein | 0.49 | HER17_RS19015 | | (2,3-dihydroxybenzoyl)adenylate synthase | low | > 75 |
| Dickeya dianthicola ME23 | 0.62 | DZA65_RS05945 | | YajQ family cyclic di-GMP-binding protein | 0.47 | DZA65_RS15595 | | (2,3-dihydroxybenzoyl)adenylate synthase | low | > 75 |
| Klebsiella pneumoniae MKP103 | 0.61 | KDGMDA_14505 | | YajQ family cyclic di-GMP-binding protein | 0.43 | KDGMDA_16105 | | enterobactin synthase subunit E | low | > 95 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.60 | GFF4337 | | FIG001943: hypothetical protein YajQ | 0.44 | GFF4501 | | 2,3-dihydroxybenzoate-AMP ligase (EC 2.7.7.58) [enterobactin] siderophore | low | > 78 |
| Pantoea agglomerans CFBP13505 P0401 | 0.60 | PagCFBP13505_RS10485 | | YajQ family cyclic di-GMP-binding protein | 0.45 | PagCFBP13505_RS09235 | | (2,3-dihydroxybenzoyl)adenylate synthase | — | — |
| Marinobacter adhaerens HP15 | 0.58 | HP15_2364 | | nucleotide-binding protein | 0.19 | HP15_4144 | | short chain acyl-CoA synthetase | low | > 73 |
| Pseudomonas aeruginosa PA14 | 0.55 | IKLFDK_02120 | | YajQ family cyclic di-GMP-binding protein | 0.46 | IKLFDK_21765 | | pyochelin biosynthesis salicyl-AMP ligase PchD | low | > 98 |
| Pseudomonas aeruginosa MRSN321 | 0.55 | DY961_RS24510 | | YajQ family cyclic di-GMP-binding protein | 0.47 | DY961_RS29375 | pchD;inference=COORDINATES | pyochelin biosynthesis salicyl-AMP ligase PchD | low | > 100 |
| Pseudomonas aeruginosa PUPa3 | 0.55 | DQ20_RS56960 | | YajQ family cyclic di-GMP-binding protein | 0.46 | DQ20_RS43700 | pchD;inference=COORDINATES | pyochelin biosynthesis salicyl-AMP ligase PchD | low | > 101 |
| Pseudomonas simiae WCS417 | 0.52 | PS417_22510 | | nucleotide-binding protein | 0.45 | PS417_13215 | | Triostin synthetase I | — | — |
| Castellaniella sp019104865 MT123 | 0.52 | ABCV34_RS15080 | | YajQ family cyclic di-GMP-binding protein | 0.17 | ABCV34_RS03750 | | cyclohexanecarboxylate-CoA ligase | low | > 48 |
| Pseudomonas segetis P6 | 0.51 | MPMX49_03784 | | hypothetical protein | 0.47 | MPMX49_02755 | | Enterobactin synthase component E | low | > 75 |
| Pseudomonas fluorescens FW300-N2E3 | 0.51 | AO353_03640 | | nucleotide-binding protein | 0.43 | AO353_23995 | | 2,3-dihydroxybenzoate-AMP ligase | low | > 101 |
| Cupriavidus basilensis FW507-4G11 | 0.50 | RR42_RS17155 | | nucleotide-binding protein | 0.20 | RR42_RS24145 | | hypothetical protein | — | — |
| Acinetobacter baumannii LAC-4 | 0.50 | RR41_RS02860 | | YajQ family cyclic di-GMP-binding protein | 0.42 | RR41_RS05495 | | (2,3-dihydroxybenzoyl)adenylate synthase BasE | low | > 55 |
| Burkholderia phytofirmans PsJN | 0.49 | BPHYT_RS15930 | | nucleotide-binding protein | 0.18 | BPHYT_RS31895 | | hypothetical protein | — | — |
| Acinetobacter radioresistens SK82 | 0.48 | MPMX26_02644 | | hypothetical protein | 0.18 | MPMX26_01930 | | Medium-chain fatty-acid--CoA ligase | — | — |
| Variovorax sp. SCN45 | 0.48 | GFF3099 | | UPF0234 protein Yitk | 0.18 | GFF4304 | | Cyclohexanecarboxylate--CoA ligase | — | — |
| Herbaspirillum seropedicae SmR1 | 0.47 | HSERO_RS07165 | | nucleotide-binding protein | 0.14 | HSERO_RS19075 | | acyl-CoA synthetase | low | > 78 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.45 | GFF292 | | FIG001943: hypothetical protein YajQ | 0.32 | GFF439 | | 2,3-dihydroxybenzoate-AMP ligase (EC 2.7.7.58) | — | — |
| Azospirillum brasilense Sp245 | 0.43 | AZOBR_RS21810 | | nucleotide-binding protein | 0.44 | AZOBR_RS29555 | | enterobactin synthase subunit E | low | > 97 |
| Mycobacterium tuberculosis H37Rv | 0.38 | Rv0566c | | Conserved protein | 0.39 | Rv2384 | | Bifunctional enzyme MbtA: salicyl-AMP ligase (SAL-AMP ligase) + salicyl-S-ArCP synthetase | low | > 58 |
Not shown: 55 genomes with orthologs for CSW01_07570 only; 6 genomes with orthologs for CSW01_04005 only