Conservation of cofitness between CSW01_19215 and CSW01_03695 in Vibrio cholerae E7946 ATCC 55056

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_19215 glucosamine-6-phosphate deaminase 1.0 CSW01_03695 ribosomal large subunit pseudouridine synthase D 0.88 15
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.84 GFF4586 Glucosamine-6-phosphate deaminase (EC 3.5.99.6) 0.70 GFF4182 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) low > 78
Klebsiella michiganensis M5al 0.84 BWI76_RS08215 glucosamine-6-phosphate deaminase 0.69 BWI76_RS21450 23S rRNA pseudouridine(1911/1915/1917) synthase low > 92
Escherichia coli Nissle 1917 0.83 ECOLIN_RS03620 glucosamine-6-phosphate deaminase 0.70 ECOLIN_RS14675 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 55
Enterobacter asburiae PDN3 0.83 EX28DRAFT_2297 glucosamine-6-phosphate isomerase 0.70 EX28DRAFT_2695 pseudouridine synthase, RluA family low > 76
Klebsiella pneumoniae MKP103 0.83 KDGMDA_16560 glucosamine-6-phosphate deaminase 0.70 KDGMDA_02140 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 95
Enterobacter sp. TBS_079 0.83 MPMX20_01324 Glucosamine-6-phosphate deaminase 0.70 MPMX20_03463 Ribosomal large subunit pseudouridine synthase D 0.11 58
Escherichia coli ECRC98 0.83 JDDGAC_10810 nagB glucosamine-6-phosphate deaminase 0.70 JDDGAC_24915 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 87
Escherichia coli ECOR38 0.83 HEPCGN_01070 nagB glucosamine-6-phosphate deaminase 0.70 HEPCGN_20375 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 88
Escherichia coli HS(pFamp)R (ATCC 700891) 0.83 OHPLBJKB_03037 Glucosamine-6-phosphate deaminase 0.70 OHPLBJKB_01112 Ribosomal large subunit pseudouridine synthase D low > 74
Escherichia coli ECRC100 0.83 OKFHMN_07160 nagB glucosamine-6-phosphate deaminase 0.70 OKFHMN_21250 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 79
Escherichia coli BW25113 0.83 b0678 nagB glucosamine-6-phosphate deaminase (NCBI) 0.70 b2594 rluD 23S rRNA pseudouridine synthase (NCBI) — —
Escherichia coli ECOR27 0.83 NOLOHH_23540 nagB glucosamine-6-phosphate deaminase 0.71 NOLOHH_12925 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 76
Escherichia coli BL21 0.83 ECD_00635 glucosamine-6-phosphate deaminase 0.70 ECD_02484 23S rRNA pseudouridine(1911,1915,1917) synthase low > 61
Escherichia coli ECRC62 0.83 BNILDI_21545 nagB glucosamine-6-phosphate deaminase 0.71 BNILDI_11730 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 75
Escherichia coli ECRC99 0.83 KEDOAH_20810 nagB glucosamine-6-phosphate deaminase 0.70 KEDOAH_06970 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Escherichia coli ECRC101 0.83 MCAODC_26375 nagB glucosamine-6-phosphate deaminase 0.70 MCAODC_11780 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 87
Escherichia coli ECRC102 0.83 NIAGMN_05215 nagB glucosamine-6-phosphate deaminase 0.70 NIAGMN_19020 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 80
Escherichia fergusonii Becca 0.83 EFB2_03425 Glucosamine-6-phosphate deaminase 0.70 EFB2_01296 Ribosomal large subunit pseudouridine synthase D low > 86
Serratia liquefaciens MT49 0.81 IAI46_06090 glucosamine-6-phosphate deaminase 0.70 IAI46_03985 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 87
Erwinia amylovora T8 0.81 OLJFJH_17085 glucosamine-6-phosphate deaminase 0.70 OLJFJH_09725 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 58
Pantoea sp. MT58 0.81 IAI47_13880 glucosamine-6-phosphate deaminase 0.70 IAI47_04425 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 76
Erwinia tracheiphila SCR3 0.81 LU632_RS16245 nagB glucosamine-6-phosphate deaminase 0.68 LU632_RS16945 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Erwinia tracheiphila HP pepo 2.2 0.81 IJEDHG_02300 nagB glucosamine-6-phosphate deaminase 0.68 IJEDHG_26870 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD — —
Pantoea agglomerans CFBP13505 P0401 0.80 PagCFBP13505_RS03425 glucosamine-6-phosphate deaminase 0.70 PagCFBP13505_RS16540 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 74
Rahnella sp. WP5 0.79 EX31_RS23265 glucosamine-6-phosphate deaminase 0.69 EX31_RS07570 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 89
Dickeya dadantii 3937 0.79 DDA3937_RS06310 glucosamine-6-phosphate deaminase 0.70 DDA3937_RS16110 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 74
Pectobacterium carotovorum WPP14 0.79 HER17_RS15105 glucosamine-6-phosphate deaminase 0.71 HER17_RS05400 23S rRNA pseudouridine(1911/1915/1917) synthase RluD low > 75
Dickeya dianthicola 67-19 0.79 HGI48_RS06355 glucosamine-6-phosphate deaminase 0.70 HGI48_RS16235 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.53 54
Dickeya dianthicola ME23 0.79 DZA65_RS06700 glucosamine-6-phosphate deaminase 0.70 DZA65_RS17330 23S rRNA pseudouridine(1911/1915/1917) synthase RluD 0.60 2
Bacteroides thetaiotaomicron VPI-5482 0.66 BT4127 glucosamine-6-phosphate isomerase (NCBI ptt file) 0.31 BT3712 ribosomal large subunit pseudouridine synthase D (NCBI ptt file) — —
Parabacteroides merdae CL09T00C40 0.65 HMPREF1078_RS11650 glucosamine-6-phosphate deaminase 0.28 HMPREF1078_RS12640 RluA family pseudouridine synthase — —
Phocaeicola vulgatus CL09T03C04 0.65 HMPREF1058_RS07305 glucosamine-6-phosphate deaminase 0.31 HMPREF1058_RS08615 RluA family pseudouridine synthase — —
Phocaeicola dorei CL03T12C01 0.65 ABI39_RS21205 glucosamine-6-phosphate deaminase 0.31 ABI39_RS02845 RluA family pseudouridine synthase — —
Bacteroides stercoris CC31F 0.65 HMPREF1181_RS08765 glucosamine-6-phosphate deaminase 0.31 HMPREF1181_RS03250 RluA family pseudouridine synthase — —
Bacteroides ovatus ATCC 8483 0.65 BACOVA_04936 glucosamine-6-phosphate deaminase 0.30 BACOVA_03528 pseudouridine synthase, RluA family — —
Fusobacterium nucleatum SB010 0.61 HUW76_06055 glucosamine-6-phosphate deaminase 0.29 HUW76_08575 RluA family pseudouridine synthase low > 35
Shewanella loihica PV-4 0.39 Shew_0815 Glucosamine-6-phosphate deaminase (EC 3.5.99.6) (from data) 0.60 Shew_2950 RluA family pseudouridine synthase (RefSeq) low > 60
Bifidobacterium breve UCC2003 0.32 BBR_RS16865 glucosamine-6-phosphate deaminase 0.19 BBR_RS17135 RluA family pseudouridine synthase low > 34
Magnetospirillum magneticum AMB-1 0.28 AMB_RS13750 glucosamine-6-phosphate deaminase 0.30 AMB_RS16095 RluA family pseudouridine synthase low > 64
Synechococcus elongatus PCC 7942 0.23 Synpcc7942_1103 glucosamine-6-phosphate isomerase 2 0.29 Synpcc7942_1112 ribosomal large subunit pseudouridine synthase D low > 38
Bosea sp. OAE506 0.16 ABIE41_RS20480 glucosamine-6-phosphate deaminase 0.32 ABIE41_RS05635 RluA family pseudouridine synthase low > 77

Not shown: 0 genomes with orthologs for CSW01_19215 only; 71 genomes with orthologs for CSW01_03695 only