| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_18210 | | cryptochrome/photolyase family protein | 1.0 | CSW01_02560 | | chromosome initiation inhibitor | 0.46 | 17 |
| Shewanella oneidensis MR-1 | 0.64 | SO4169 | | conserved hypothetical protein (NCBI ptt file) | 0.37 | SO2866 | iciA | chromosome initiation inhibitor (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.64 | Shewana3_3704 | | deoxyribodipyrimidine photolyase-related protein (RefSeq) | 0.37 | Shewana3_1652 | | chromosome replication initiation inhibitor protein (RefSeq) | low | > 73 |
| Shewanella amazonensis SB2B | 0.60 | Sama_2497 | | hypothetical protein (RefSeq) | 0.40 | Sama_2987 | | chromosome replication initiation inhibitor protein (RefSeq) | low | > 62 |
| Acidovorax sp. GW101-3H11 | 0.46 | Ac3H11_79 | | photolyase protein family | 0.27 | Ac3H11_3378 | | chromosome replication initiation inhibitor protein | low | > 79 |
| Ralstonia sp. UNC404CL21Col | 0.45 | ABZR87_RS21020 | | cryptochrome/photolyase family protein | 0.30 | ABZR87_RS14025 | | LysR family transcriptional regulator ArgP | low | > 80 |
| Enterobacter asburiae PDN3 | 0.43 | EX28DRAFT_0580 | | Uncharacterized protein related to deoxyribodipyrimidine photolyase | 0.45 | EX28DRAFT_2967 | | transcriptional regulator, ArgP family | low | > 76 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.38 | Xcc-8004.3664.1 | | photolyase protein family | 0.26 | Xcc-8004.1463.1 | | Transcriptional regulator lysR family | low | > 74 |
| Alteromonas macleodii MIT1002 | 0.38 | MIT1002_02046 | | Deoxyribodipyrimidine photo-lyase-related protein | 0.29 | MIT1002_00129 | | OriC replication inhibitor | low | > 70 |
| Phaeobacter inhibens DSM 17395 | 0.38 | PGA1_c00350 | | Uncharacterized protein related to deoxyribodipyrimidine photolyase | 0.23 | PGA1_c21740 | | transcriptional regulator, ArgP family | low | > 62 |
| Marinobacter adhaerens HP15 | 0.37 | HP15_2954 | | deoxyribodipyrimidine photolyase-related protein | 0.30 | HP15_868 | | transcriptional regulator, LysR family | low | > 73 |
| Pseudomonas sp. S08-1 | 0.37 | OH686_23385 | | deoxyribodipyrimidine photolyase-related protein | 0.30 | OH686_07195 | | Transcriptional regulator ArgP, LysR family | low | > 80 |
| Dinoroseobacter shibae DFL-12 | 0.37 | Dshi_0599 | | deoxyribodipyrimidine photolyase-related protein (RefSeq) | 0.26 | Dshi_0711 | | transcriptional regulator, LysR family (RefSeq) | low | > 64 |
| Pseudomonas sp. BP01 | 0.36 | JOY50_RS03395 | | cryptochrome/photolyase family protein | 0.32 | JOY50_RS14225 | | LysR family transcriptional regulator ArgP | — | — |
| Pseudomonas putida KT2440 | 0.36 | PP_2732 | | conserved protein of unknown function | 0.30 | PP_0917 | | Chromosome initiation inhibitor | low | > 96 |
| Pseudomonas sp. DMC3 | 0.36 | GFF2799 | | (6-4) photolyase | 0.30 | GFF5060 | | HTH-type transcriptional regulator ArgP | low | > 89 |
| Pseudomonas stutzeri RCH2 | 0.36 | Psest_3392 | | Uncharacterized protein related to deoxyribodipyrimidine photolyase | 0.32 | Psest_1166 | | transcriptional regulator, ArgP family | low | > 67 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.35 | Psyr_1785 | | Deoxyribodipyrimidine photolyase-related protein | 0.34 | Psyr_4057 | | regulatory protein, LysR:LysR, substrate-binding protein | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.35 | Psyr_1785 | | Deoxyribodipyrimidine photolyase-related protein | 0.34 | Psyr_4057 | | regulatory protein, LysR:LysR, substrate-binding protein | low | > 86 |
| Agrobacterium fabrum C58 | 0.34 | Atu4765 | | hypothetical protein | 0.27 | Atu0928 | | transcriptional regulator, LysR family | low | > 89 |
Not shown: 11 genomes with orthologs for CSW01_18210 only; 65 genomes with orthologs for CSW01_02560 only