Conservation of cofitness between CSW01_04585 and CSW01_01280 in Vibrio cholerae E7946 ATCC 55056

39 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_04585 tRNA 4-thiouridine(8) synthase ThiI 1.0 CSW01_01280 GDP-mannose 4,6-dehydratase 0.75 17
Dickeya dianthicola 67-19 0.67 HGI48_RS05605 tRNA 4-thiouridine(8) synthase ThiI 0.87 HGI48_RS18595 GDP-mannose 4,6-dehydratase low > 71
Dickeya dianthicola ME23 0.67 DZA65_RS05930 tRNA 4-thiouridine(8) synthase ThiI 0.87 DZA65_RS19730 GDP-mannose 4,6-dehydratase low > 75
Dickeya dadantii 3937 0.67 DDA3937_RS05545 tRNA 4-thiouridine(8) synthase ThiI 0.87 DDA3937_RS18665 GDP-mannose 4,6-dehydratase low > 74
Rahnella sp. WP5 0.66 EX31_RS22170 tRNA 4-thiouridine(8) synthase ThiI 0.52 EX31_RS02865 GDP-mannose 4,6-dehydratase low > 89
Pectobacterium carotovorum WPP14 0.66 HER17_RS15920 tRNA 4-thiouridine(8) synthase ThiI 0.78 HER17_RS14540 GDP-mannose 4,6-dehydratase low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.66 GFF4327 tRNA S(4)U 4-thiouridine synthase (former ThiI) / Rhodanese-like domain required for thiamine synthesis 0.83 GFF3875 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) low > 78
Escherichia coli ECRC101 0.66 MCAODC_27630 thiI tRNA sulfurtransferase 0.83 MCAODC_20500 GDP-mannose 4,6-dehydratase — —
Escherichia coli ECRC99 0.66 KEDOAH_19560 thiI tRNA sulfurtransferase 0.83 KEDOAH_03710 GDP-mannose 4,6-dehydratase — —
Escherichia coli ECRC100 0.66 OKFHMN_08405 thiI tRNA sulfurtransferase 0.83 OKFHMN_24440 GDP-mannose 4,6-dehydratase — —
Escherichia coli ECRC98 0.66 JDDGAC_12060 thiI tRNA sulfurtransferase 0.83 JDDGAC_28550 GDP-mannose 4,6-dehydratase — —
Escherichia coli ECRC102 0.66 NIAGMN_06460 thiI tRNA sulfurtransferase 0.83 NIAGMN_22385 GDP-mannose 4,6-dehydratase — —
Escherichia fergusonii Becca 0.66 EFB2_03634 tRNA sulfurtransferase 0.83 EFB2_01801 GDP-mannose 4,6-dehydratase low > 86
Erwinia amylovora T8 0.65 OLJFJH_18050 tRNA sulfurtransferase 0.10 OLJFJH_12090 dTDP-glucose 4 6-dehydratase — —
Escherichia coli ECOR38 0.65 HEPCGN_07035 thiI tRNA sulfurtransferase 0.83 HEPCGN_03045 GDP-mannose 4,6-dehydratase low > 87
Escherichia coli BW25113 0.65 b0423 thiI thiamine biosynthesis protein ThiI (NCBI) 0.83 b2053 gmd GDP-D-mannose dehydratase, NAD(P)-binding (NCBI) low > 76
Escherichia coli Nissle 1917 0.65 ECOLIN_RS02550 tRNA uracil 4-sulfurtransferase ThiI 0.82 ECOLIN_RS12095 GDP-mannose 4,6-dehydratase low > 55
Escherichia coli BL21 0.65 ECD_00371 tRNA s(4)U8 sulfurtransferase 0.83 ECD_01959 GDP-D-mannose dehydratase, NAD(P)-binding low > 61
Escherichia coli ECOR27 0.65 NOLOHH_01355 thiI tRNA sulfurtransferase 0.83 NOLOHH_15675 GDP-mannose 4,6-dehydratase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.65 OHPLBJKB_03253 tRNA sulfurtransferase 0.10 OHPLBJKB_04266 dTDP-glucose 4,6-dehydratase 2 low > 73
Escherichia coli ECRC62 0.65 BNILDI_22770 thiI tRNA sulfurtransferase 0.83 BNILDI_14585 GDP-mannose 4,6-dehydratase low > 75
Enterobacter sp. TBS_079 0.64 MPMX20_01014 tRNA sulfurtransferase 0.82 MPMX20_03035 GDP-mannose 4,6-dehydratase low > 85
Enterobacter asburiae PDN3 0.64 EX28DRAFT_2548 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain 0.83 EX28DRAFT_0502 GDP-mannose 4,6-dehydratase low > 76
Pantoea sp. MT58 0.64 IAI47_14725 tRNA 4-thiouridine(8) synthase ThiI 0.11 IAI47_18500 dTDP-glucose 4,6-dehydratase — —
Pseudomonas stutzeri RCH2 0.46 Psest_3927 thiazole biosynthesis/tRNA modification protein ThiI 0.83 Psest_1818 GDP-mannose 4,6-dehydratase low > 67
Pseudomonas sp. SVBP6 0.45 COO64_RS13350 thiI tRNA uracil 4-sulfurtransferase ThiI 0.45 COO64_RS06615 gmd GDP-mannose 4,6-dehydratase — —
Pseudomonas putida KT2440 0.45 PP_5045 tRNA sulfurtransferase 0.46 PP_1799 GDP-mannose 4,6-dehydratase low > 96
Pseudomonas aeruginosa PA14 0.45 IKLFDK_27930 tRNA sulfurtransferase 0.39 IKLFDK_26150 GDP-mannose 4 6-dehydratase low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.44 Psyr_4816 [ThiS-adenylate] sulfurtransferase 0.45 Psyr_0916 GDP-mannose 4,6-dehydratase — —
Pseudomonas fluorescens FW300-N2E3 0.44 AO353_12175 tRNA s(4)U8 sulfurtransferase 0.42 AO353_10245 GDP-mannose 4,6-dehydratase — —
Pseudomonas fluorescens SBW25-INTG 0.44 PFLU_RS01715 tRNA 4-thiouridine(8) synthase ThiI 0.77 PFLU_RS17890 GDP-mannose 4,6-dehydratase — —
Pseudomonas syringae pv. syringae B728a 0.44 Psyr_4816 [ThiS-adenylate] sulfurtransferase 0.45 Psyr_0916 GDP-mannose 4,6-dehydratase — —
Pseudomonas fluorescens SBW25 0.44 PFLU_RS01715 tRNA 4-thiouridine(8) synthase ThiI 0.77 PFLU_RS17890 GDP-mannose 4,6-dehydratase — —
Pseudomonas fluorescens FW300-N1B4 0.44 Pf1N1B4_1604 tRNA S(4)U 4-thiouridine synthase (former ThiI) / Rhodanese-like domain required for thiamine synthesis 0.39 Pf1N1B4_1965 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) — —
Pseudomonas sp. S08-1 0.44 OH686_10615 tRNA 4-thiouridine synthase / Rhodanese-like domain required for thiamine synthesis 0.40 OH686_11980 GDP-mannose 4,6-dehydratase low > 80
Pseudomonas sp. DMC3 0.44 GFF4076 tRNA sulfurtransferase 0.40 GFF545 GDP-mannose 4,6-dehydratase — —
Pseudomonas fluorescens FW300-N2E2 0.44 Pf6N2E2_3819 Thiamine biosynthesis protein thiI 0.40 Pf6N2E2_4242 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) — —
Pseudomonas fluorescens GW456-L13 0.43 PfGW456L13_341 tRNA S(4)U 4-thiouridine synthase (former ThiI) / Rhodanese-like domain required for thiamine synthesis 0.40 PfGW456L13_2338 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) — —
Pseudomonas fluorescens FW300-N2C3 0.43 AO356_09700 tRNA s(4)U8 sulfurtransferase 0.40 AO356_11835 GDP-mannose 4,6-dehydratase — —
Pseudomonas sp. RS175 0.43 PFR28_04950 tRNA sulfurtransferase 0.40 PFR28_04554 GDP-mannose 4,6-dehydratase — —

Not shown: 10 genomes with orthologs for CSW01_04585 only; 44 genomes with orthologs for CSW01_01280 only