Conservation of cofitness between CSW01_07545 and CSW01_00290 in Vibrio cholerae E7946 ATCC 55056

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_07545 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 1.0 CSW01_00290 gamma carbonic anhydrase family protein 0.71 11
Escherichia coli ECRC101 0.55 MCAODC_18965 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.65 MCAODC_08095 yrdA Protein YrdA low > 88
Escherichia coli ECRC99 0.54 KEDOAH_01665 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.65 KEDOAH_10575 yrdA Protein YrdA — —
Escherichia coli ECRC102 0.54 NIAGMN_01620 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.65 NIAGMN_15335 yrdA Protein YrdA — —
Escherichia coli ECRC98 0.54 JDDGAC_01015 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.65 JDDGAC_21195 yrdA Protein YrdA low > 87
Escherichia coli ECRC100 0.54 OKFHMN_26440 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.65 OKFHMN_17575 yrdA Protein YrdA — —
Escherichia coli ECOR38 0.54 HEPCGN_04840 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.65 HEPCGN_16395 yrdA Protein YrdA low > 88
Escherichia coli ECRC62 0.54 BNILDI_15745 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.65 BNILDI_02155 yrdA Protein YrdA low > 75
Escherichia coli ECOR27 0.54 NOLOHH_16950 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.65 NOLOHH_09365 yrdA Protein YrdA — —
Escherichia coli BL21 0.54 ECD_01806 16S rRNA m(5)C1407 methyltransferase, SAM-dependent 0.65 ECD_03130 bacterial transferase hexapeptide domain protein — —
Escherichia coli Nissle 1917 0.54 ECOLIN_RS10215 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.65 ECOLIN_RS18830 gamma carbonic anhydrase family protein — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.54 OHPLBJKB_01896 Ribosomal RNA small subunit methyltransferase F 0.65 OHPLBJKB_00424 Protein YrdA low > 74
Escherichia coli BW25113 0.54 b1835 yebU putative nucleolar proteins (VIMSS) 0.65 b3279 yrdA putative transferase (VIMSS) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.54 GFF2850 Ribosomal RNA small subunit methyltransferase F (EC 2.1.1.-) 0.67 GFF2399 carbonic anhydrase, family 3 low > 78
Escherichia fergusonii Becca 0.54 EFB2_02166 Ribosomal RNA small subunit methyltransferase F 0.65 EFB2_00544 Protein YrdA low > 86
Pantoea sp. MT58 0.53 IAI47_08680 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.64 IAI47_02325 gamma carbonic anhydrase family protein low > 76
Enterobacter asburiae PDN3 0.53 EX28DRAFT_0721 NOL1/NOP2/sun family putative RNA methylase 0.65 EX28DRAFT_0048 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily low > 76
Pantoea agglomerans CFBP13505 P0401 0.53 PagCFBP13505_RS02510 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.69 PagCFBP13505_RS22570 gamma carbonic anhydrase family protein low > 74
Serratia liquefaciens MT49 0.52 IAI46_10775 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.66 IAI46_23235 gamma carbonic anhydrase family protein low > 86
Enterobacter sp. TBS_079 0.52 MPMX20_02742 Ribosomal RNA small subunit methyltransferase F 0.66 MPMX20_04187 Protein YrdA low > 85
Dickeya dadantii 3937 0.51 DDA3937_RS11990 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.64 DDA3937_RS19090 gamma carbonic anhydrase family protein low > 74
Dickeya dianthicola 67-19 0.51 HGI48_RS12080 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.63 HGI48_RS19180 gamma carbonic anhydrase family protein low > 71
Pectobacterium carotovorum WPP14 0.51 HER17_RS11715 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.63 HER17_RS02260 gamma carbonic anhydrase family protein low > 75
Klebsiella michiganensis M5al 0.51 BWI76_RS18000 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.67 BWI76_RS25635 gamma carbonic anhydrase family protein low > 92
Erwinia amylovora T8 0.51 OLJFJH_12985 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.63 OLJFJH_03675 gamma carbonic anhydrase family protein low > 58
Dickeya dianthicola ME23 0.51 DZA65_RS12530 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.63 DZA65_RS20305 gamma carbonic anhydrase family protein low > 75
Klebsiella pneumoniae MKP103 0.50 KDGMDA_25270 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.64 KDGMDA_06505 gamma carbonic anhydrase family protein low > 95
Rahnella sp. WP5 0.50 EX31_RS24855 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.66 EX31_RS15945 gamma carbonic anhydrase family protein low > 89
Shewanella oneidensis MR-1 0.50 SO2609 NOL1/NOP2/sun family protein (NCBI ptt file) 0.70 SO0042 carbonic anhydrase, family 3 (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.50 Shewana3_1770 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) 0.69 Shewana3_0045 carbonic anhydrase (RefSeq) low > 73
Shewanella loihica PV-4 0.48 Shew_1583 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) 0.67 Shew_3725 carbonic anhydrase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.44 Sama_2039 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) 0.70 Sama_0054 carbonic anhydrase (RefSeq) low > 62
Kangiella aquimarina DSM 16071 0.43 B158DRAFT_0839 NOL1/NOP2/sun family putative RNA methylase 0.55 B158DRAFT_0464 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily — —
Bacteroides thetaiotaomicron VPI-5482 0.16 BT2042 tRNA and rRNA cytosine-C5-methylase (NCBI ptt file) 0.35 BT2744 acetyltransferase (NCBI ptt file) low > 81
Pontibacter actiniarum KMM 6156, DSM 19842 0.15 CA264_05610 rRNA methyltransferase 0.41 CA264_14360 gamma carbonic anhydrase family protein low > 74
Bacteroides stercoris CC31F 0.15 HMPREF1181_RS08100 rRNA cytosine-C5-methyltransferase 0.34 HMPREF1181_RS00640 gamma carbonic anhydrase family protein low > 56
Mucilaginibacter yixingensis YX-36 DSM 26809 0.15 ABZR88_RS00225 RNA methyltransferase 0.41 ABZR88_RS20625 gamma carbonic anhydrase family protein low > 71
Bacteroides ovatus ATCC 8483 0.15 BACOVA_00671 NOL1/NOP2/sun family protein 0.34 BACOVA_01053 hexapeptide transferase family protein low > 96
Echinicola vietnamensis KMM 6221, DSM 17526 0.15 Echvi_1153 tRNA and rRNA cytosine-C5-methylases 0.36 Echvi_2335 Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily low > 79
Parabacteroides merdae CL09T00C40 0.15 HMPREF1078_RS16740 rRNA cytosine-C5-methyltransferase 0.34 HMPREF1078_RS13110 gamma carbonic anhydrase family protein low > 61
Phocaeicola vulgatus CL09T03C04 0.15 HMPREF1058_RS14300 rRNA cytosine-C5-methyltransferase 0.36 HMPREF1058_RS09460 gamma carbonic anhydrase family protein low > 67
Phocaeicola dorei CL03T12C01 0.14 ABI39_RS09930 rRNA cytosine-C5-methyltransferase 0.36 ABI39_RS03850 gamma carbonic anhydrase family protein low > 72

Not shown: 1 genomes with orthologs for CSW01_07545 only; 73 genomes with orthologs for CSW01_00290 only